Bosea sp. NBC_00550: NWE53_10005
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Entry
NWE53_10005 CDS
T09927
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bow
Bosea sp. NBC_00550
Pathway
bow03030
DNA replication
bow03410
Base excision repair
bow03420
Nucleotide excision repair
bow03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bow00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NWE53_10005 (ligA)
03410 Base excision repair
NWE53_10005 (ligA)
03420 Nucleotide excision repair
NWE53_10005 (ligA)
03430 Mismatch repair
NWE53_10005 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bow03032
]
NWE53_10005 (ligA)
03400 DNA repair and recombination proteins [BR:
bow03400
]
NWE53_10005 (ligA)
Enzymes [BR:
bow01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NWE53_10005 (ligA)
DNA replication proteins [BR:
bow03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NWE53_10005 (ligA)
DNA repair and recombination proteins [BR:
bow03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NWE53_10005 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NWE53_10005 (ligA)
MMR (mismatch excision repair)
DNA ligase
NWE53_10005 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NWE53_10005 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
DUF6981
Zn_ribbon_PaaD
Motif
Other DBs
NCBI-ProteinID:
UZF94476
LinkDB
All DBs
Position
complement(2094217..2096382)
Genome browser
AA seq
721 aa
AA seq
DB search
MSDADDTALSETPVAELTPRKAKVEHKRLAAEVQAANDAYFQDDQPIIDDAAYDAKRQRL
VALEEAFPELKDAAGVSGKVGAKPSGKFAKIRHRVPMLSLDNAFSDEAVAEFVGRVYRFL
GRKEEEGIAFTAEPKIDGLSLSLRYEKGELVSAATRGDGEEGEDVTVNARTISEIPHRLE
GGDIPEIAEVRGEVYLGHADFAGINERQREKRLPEFANPRNAAAGSLRQLDATITAARPL
RYFAYAWGEMPVLPAPTQMGVVEIFRRWGFRTNPLMKRCESVAELLERYRLIESQRATLG
YDIDGVVYKVDDLALQARLGFVSRAPRWAIAHKFPAELATTILEAIDIQVGRTGALSPVA
RLKPVTVGGVVVTNATLHNEDYIRGFDSKGLPIRDGTDIRIGDTVTVKRAGDVIPRVEAV
DLAKRPADSKPYEFPTLCPACGSHATRELNPRTGKEDAVRRCTGGLICPAQSVERLKHFV
SRDAMDIDGLGDKQIEFFHSDPELPVREPADIFTLAERDAANFKKLKDKDGFGAVSARKL
FDAIEDRRTPPLNRFIFGLGIRHIGETTARLLARHYGSFEALRAASIAAADEASPERQEL
NAIDSVGPTVVEALIEFFGEPHNEELLDRLLAQVSPQPLEAVASASPVAGKTVVFTGALE
RMTRDEAKAMAERLGAKVAGSVSSKTDLLVAGPGAGSKLKDAAKHGVEVIDEAGWFDLVG
G
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgccgacgacaccgccctctccgaaaccccggttgccgagctgacgccgcgc
aaggcgaaggtcgagcacaagcggcttgccgccgaggtgcaggcggcgaacgacgcctat
ttccaggacgatcagccgatcatcgacgacgcggcctatgacgcgaagcgtcagcggctc
gtcgcgctcgaagaggcctttcccgagctgaaggacgccgccggcgtcagcggcaaggtc
ggcgccaagccttcgggcaagttcgccaaaatccgccatcgcgtgccgatgctctcgctc
gacaacgccttctccgatgaggcggtggccgaattcgtcggccgtgtctatcgcttcctc
gggcgcaaggaggaggagggcatcgcctttaccgccgagccgaagatcgacgggctgtcg
ctttcgctgcgctacgagaagggcgaactcgtctctgccgcgacgcgcggcgacggcgag
gagggtgaggacgtcacggtcaacgcccggaccatctcggagattccgcaccggctggag
ggcggagacattccggagatcgccgaggtgcgcggcgaggtctatctcggccatgccgat
ttcgctgggatcaacgagcgccagcgcgagaagaggttgccggaattcgccaatccgcgc
aacgccgcggcgggctcgctgcgccagctcgacgcgacgatcacggctgcccggcccctg
cgctacttcgcctatgcctggggcgagatgccggtgttgccggcgccgacccagatgggc
gtggtcgaaatctttcggcgatggggcttccgcaccaatccgctgatgaagcgctgcgag
agcgtggcggagctgctggagcgttaccggctgatcgagagccagcgcgcaacgctcggc
tacgatatcgacggcgtggtctacaaggtcgacgatctcgcgttgcaggccaggctcggc
ttcgtctcgcgggcgccgcgctgggcgatcgcgcacaaattcccggccgaactcgcgacc
accatcctggaggcgatcgatatccaggtcgggcgcaccggcgcattgtcgccggtggcg
cggttgaagccggtgacggtcggcggcgtcgtcgtgaccaatgcgacgctgcacaacgag
gattatatccgcggcttcgattccaaggggctgccgatccgcgacggcaccgacatccgc
atcggcgacacggtgacggtgaagcgtgcgggcgacgtcatcccgcgcgtcgaggccgtc
gatctcgccaagcgtccggcggattcgaagccatatgagttcccgacgctctgcccggcc
tgcggcagccatgcgacgcgcgaactcaacccccgcaccggaaaagaggatgccgtgcgc
cgctgcaccggcgggctgatctgcccggcgcaatcggtcgagcgtctcaagcatttcgtc
tcgcgcgatgcgatggatatcgacgggctcggcgacaagcagatcgagttcttccattcc
gatccggagctgcctgtgagggagccggccgatatcttcacgctggccgagcgcgacgcc
gccaacttcaagaagctcaaggacaaggatggcttcggcgcggtcagcgccaggaagctc
ttcgacgcgatcgaggaccggcgcaccccaccgctcaaccgcttcatcttcgggctgggc
atccgccatatcggcgagacgacggcgcgacttctggcgcggcattatggctcgttcgag
gcgctgcgggcggccagcatcgcggcggcggacgaggcctcgcccgagcgacaggaactc
aacgccatcgacagcgtcgggccgaccgtggtcgaggcgttgatcgagttcttcggcgaa
ccgcataacgaggagctgctcgaccgtctgctggcgcaggtgtcgccgcagccgctggag
gcggtggcctccgcgagcccggtcgccggcaagaccgtggtcttcaccggtgcgttggag
cggatgacgcgcgacgaagccaaggcgatggccgagcggctgggcgccaaggtggcgggc
tcggtctcgtcgaagaccgacctgctcgtcgccgggccgggcgccggctcgaagctcaag
gatgccgccaagcacggcgtcgaggtgatcgacgaggccggctggttcgatctggtgggt
gggtga
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integrated database retrieval system
