Brasilonema octagenarum: DP113_03145
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Entry
DP113_03145 CDS
T10103
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
box Brasilonema octagenarum
Pathway
box03030
DNA replication
box03410
Base excision repair
box03420
Nucleotide excision repair
box03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
box00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DP113_03145 (ligA)
03410 Base excision repair
DP113_03145 (ligA)
03420 Nucleotide excision repair
DP113_03145 (ligA)
03430 Mismatch repair
DP113_03145 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
box03032
]
DP113_03145 (ligA)
03400 DNA repair and recombination proteins [BR:
box03400
]
DP113_03145 (ligA)
Enzymes [BR:
box01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DP113_03145 (ligA)
DNA replication proteins [BR:
box03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DP113_03145 (ligA)
DNA repair and recombination proteins [BR:
box03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DP113_03145 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DP113_03145 (ligA)
MMR (mismatch excision repair)
DNA ligase
DP113_03145 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DP113_03145 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
HNOB
Motif
Other DBs
NCBI-ProteinID:
QDL18457
LinkDB
All DBs
Position
complement(748411..750459)
Genome browser
AA seq
682 aa
AA seq
DB search
MQAINTEAKQRVQELRQLLQKASLAYYVLDSPIMEDAVYDQLYRELQQLENQYPELVAPD
SPTQRVGEKPATQFLSVRHNVPLYSLENAFNIDELKAWEGRWRRQAPNVGEVEYVCELKI
DGSALALTYENGILTRGATRGDGVMGEDITQNVRTIRSIPLRLNVETLRENSLPERIEVR
GEAFLPLEVFKQINEERQKVGEAVFANPRNAAAGTLRQLDSRTVARRRLDFFAYTLHIPG
RDDASIANTQWEALELLQKLGFRVNPNHKLCPSLEDVAQYYGYWDTERLNLPYMTDGVVV
KLNSFKLQEQLGFTQKFPRWAIALKYAAEEAPTRVENIAVNVGRTGALTPLAQMHPVQLA
GTTVSRATLHNADRIAQLDIRIGDTVIVRKAGEIIPEVVRVLKELRPENAQSFVMPSHCP
VCSSAVVREMGEAVTRCVNISCPAILKGAIEHWVSRDALDIKGMGEKLVHQLVDKGVVHS
VADVYNLTEEKLCALERMGKKLAQKLVEAIAQSKNQPWSRVLYGLGIRHVGSVNAQLLTQ
KFPTVEQLAQASQADIETVHGIGEEIAQSVHQWFHISANQSLISRLKDAGLQFAGAVEET
AVSQSHQKFAGKTFVITGTLPTLKRDEAKELIQKAGGKVTDSVSKKTDFLVVGEEAGSKL
VKAQELGVRQLSEGELLELLED
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagcgataaacacagaagccaaacagcgcgttcaagaactgcgacaattactacaa
aaggcgagcttagcctactacgtccttgattctcccattatggaggacgcagtttatgac
cagttatatcgagaattgcaacaactggaaaatcagtatccagaattggttgcacctgat
agccccactcaacgggtaggagagaaaccagcaactcaatttctctcagttcgccacaat
gttccactctatagtttagaaaatgcgtttaacattgacgagttaaaggcatgggaaggg
cgctggcggcgacaagcacctaacgtaggagaggtggagtatgtctgcgaactgaaaatt
gatggttctgccttagcgttgacatatgaaaatggtattctcaccagaggtgcaactagg
ggtgacggagttatgggtgaagacatcacccaaaatgtgcggactattcgctcaattccc
ttgcgcttgaatgtagagacattacgtgaaaactctcttccagagaggatagaggtgcga
ggtgaagcgtttttacctttggaagtgtttaaacaaatcaatgaggaaaggcaaaaagtc
ggtgaagcagtctttgctaatcctcgaaacgctgctgctggaaccctcagacaattagac
tcccgaactgtagcccgacgacggttagatttctttgcctacacgctacatattcctggt
agagatgatgctagtatcgctaatactcagtgggaagctctggaattgttacaaaagttg
gggtttcgcgtcaaccctaaccataagctttgtccttctctggaagatgttgcacagtat
tatggatactgggacaccgaaaggctgaatttgccttacatgacagatggggtggtggta
aagctgaattcttttaagctgcaggaacaactggggtttacgcaaaagtttccccgttgg
gcgatcgccctaaaatatgcagcagaagaagcacccacccgtgtagaaaatattgctgtc
aacgtgggaagaacgggggcgctgactcctcttgctcaaatgcaccctgtgcaactcgca
gggacaacggtttctcgtgctaccctacataatgctgaccgtattgctcaattagatatc
cggattggtgatacagttattgtccgtaaagctggggaaattattccagaagtcgtgcgg
gttcttaaagaactccgtcctgagaatgctcaaagctttgttatgccttcccattgtccg
gtttgctcaagtgcagtggttcgggagatgggagaagcggtgactcgctgcgttaatatt
tcttgtccagctatcctgaagggggcgatcgaacattgggtgagtcgcgatgctttggat
atcaagggtatgggcgaaaaactggtgcatcaacttgtggataaaggagtggtgcattct
gttgccgatgtgtacaacttgacagaagaaaagttatgtgcattggagcggatggggaaa
aagttggcacagaagttggtggaggcgatcgcccaatcaaaaaaccaaccttggtcacgc
gtgttgtatggtttgggtattcgtcacgttggtagcgtgaatgctcaattgttgacacag
aagtttcccacggtggaacagttggcgcaagcttcacaagcagatattgaaactgttcac
ggtatcggtgaggaaattgctcagtctgtacaccagtggttccacatcagtgcaaatcaa
agtttgatttctcggttgaaagatgctgggttgcaatttgctggtgctgtggaggaaact
gcggtgagtcagagtcatcaaaagtttgctgggaaaacttttgtgattactggtacgctt
cctactttgaagcgggatgaggcgaaggagttgattcagaaggctggtggaaaggtgacg
gattctgtgagtaagaaaacagattttttggttgtgggtgaagaggcgggttctaagttg
gtaaaggcgcaagagttgggtgttcgtcagttgagtgaaggggagttgttggagttgttg
gaggattaa
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integrated database retrieval system
