Orrella marina: DBV39_10430
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Entry
DBV39_10430 CDS
T05532
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
boz
Orrella marina
Pathway
boz03030
DNA replication
boz03410
Base excision repair
boz03420
Nucleotide excision repair
boz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
boz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DBV39_10430 (ligA)
03410 Base excision repair
DBV39_10430 (ligA)
03420 Nucleotide excision repair
DBV39_10430 (ligA)
03430 Mismatch repair
DBV39_10430 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
boz03032
]
DBV39_10430 (ligA)
03400 DNA repair and recombination proteins [BR:
boz03400
]
DBV39_10430 (ligA)
Enzymes [BR:
boz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DBV39_10430 (ligA)
DNA replication proteins [BR:
boz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DBV39_10430 (ligA)
DNA repair and recombination proteins [BR:
boz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DBV39_10430 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DBV39_10430 (ligA)
MMR (mismatch excision repair)
DNA ligase
DBV39_10430 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DBV39_10430 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AWB34063
UniProt:
A0A2R4XJX3
LinkDB
All DBs
Position
complement(2287835..2289895)
Genome browser
AA seq
686 aa
AA seq
DB search
MTAPDILERVRTLRDQIEQHNRAYYLQDSPTVSDAEYDNLMRELESLEVQHPELVTPDSP
TQRVGVKPSERFATVVHQVPMLSLGNAFEQQEVIAFDKRVSDTLRQAGLIHPGQDVEYFC
ELKLDGLAISLRYENGLLVQAATRGDGQTGEDVTANVKTIKSIPLRLKSEPNGPNSVGVP
EILEVRGEVFMNLADFRRLNERQAERSEKVFVNPRNAAAGSLRQLDPAVTARRPLRFFAY
GWGEVSEALPERHEDILNWFVQLGLPVNVSEHQCVRSAKGLMAFYEQVGGKRERLLYDID
GVVYKVNALAAQRTLGYVARAPRFALAHKFPAQEVTTRLLDIQFQVGRTGAITPVARLEP
VFVGGVTVTSATLHNEDEIRRKDVRVGDMVVVRRAGDVIPEVLGPVLEKRSEGATPFEMI
NACPVCGSAIERPEGEAVARCTGGLVCQAQRKQSLIHAVSRKALDIDGLGDKLVEQLVDT
GRVRTLADVFTLKVEELEALDRMGSKSAQNLVNAINAAAQPTLARFIYALGIRHVGETTA
RDLAQSFGCIQALMDADEDALLAVSDVGPVVAKSIQHFFAEPHNREVVADLLAHGVVPQQ
AAQSTAQSDQLAGKTFVLTGTLPGWTREEATQAILEAGGKVTGSVSKKTSYVVAGSEAGS
KLEKARQLGVIILDEDQLKSLLARSG
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgacagcacctgatattcttgagcgcgtgcgtacgctgcgcgatcagattgaacagcat
aaccgtgcgtattatttacaggactcaccgaccgtttcagatgccgagtacgacaatctg
atgcgtgaactggaatcgctggaagtgcagcatcctgagctggtgacaccagattcgccc
acccagcgtgtcggtgtcaaaccctctgagcggtttgcgaccgtcgtccatcaggtaccg
atgctttccctgggtaatgcgtttgaacagcaggaagtgattgcgttcgacaaacgggtg
tcagatacattgcgtcaagcgggtctgattcatccagggcaggatgtagagtatttttgt
gaactcaaactcgatggccttgcgatcagtttgcggtacgagaacggattgctggtgcaa
gccgcaaccagaggggatggccagactggcgaggacgtcactgcaaacgtcaagacgatc
aagtccatcccattacgcctaaagtctgaaccgaatggtccgaactcagtgggtgtgccc
gagatactggaggtgcgtggcgaagtcttcatgaatctggcggactttcggcgtctgaat
gagcggcaggcggaacgctcggagaaggtgtttgtcaaccctcgcaacgctgctgcgggt
agtctgcgtcaacttgatcccgcagtgaccgcacgcaggccattgaggttttttgcgtat
ggctggggcgaggtcagtgaagcgctcccagaaagacacgaagatattctcaactggttt
gttcagctcgggctaccggtgaatgtgtcagaacaccagtgtgtacgttcagccaaaggg
ctgatggccttttacgagcaagtagggggtaagcgggagcgattgctctacgacatcgac
ggtgtggtttacaaggttaatgctctcgcggcacaacgaaccctggggtacgttgcccgt
gcacctcggtttgcgttggcgcacaagtttccggctcaggaagtgacgacccgactgctt
gatattcagtttcaggttggacgtactggcgcgattacaccagttgcacgactcgaacca
gtgttcgtcggtggcgtcaccgtgaccagtgctaccctgcacaatgaggacgagattcgc
agaaaggatgtgcgtgttggcgatatggtggtcgttcgacgtgcgggcgatgtcattccg
gaggtgctcggacccgttctggagaagcgttccgaaggcgcgactcccttcgagatgatc
aatgcgtgtcccgtatgtggatctgcgattgagagacctgagggtgaggctgtcgcgcgt
tgtaccggcgggctggtctgccaggcccagcgcaagcaaagcctgatacacgcagttagt
cgcaaggcgcttgatattgatggtcttggagacaagctggtcgagcagctggtggatacc
gggcgtgtccggacgctggcagatgtctttacattgaaggtggaggaacttgaagccctt
gacagaatgggcagcaaatcagctcagaatctggtcaacgcaatcaatgcggcagcacaa
ccaacattggccaggtttatttatgcattgggcatacgccatgtcggagagaccactgcc
cgggatctggcccaaagttttgggtgcatacaggcactcatggatgctgatgaagatgcg
ttgctggccgtttctgatgttggtcctgtcgtggcaaagtcgatccagcatttttttgcg
gagccgcataatcgggaggttgtcgcggatctgcttgcgcacggagttgttccgcaacaa
gctgcacaatcaactgcacagtcggatcagcttgctggcaagacgtttgtgctgactgga
acgctacctggctggacaagggaagaagccacacaggcaattctcgaggcgggtggaaag
gtcacgggctcagtctcgaagaaaacgagctatgtcgtggctggttcggaagcaggctcg
aagcttgaaaaggccaggcaactgggtgtcatcattcttgatgaagatcagctcaagtcc
ttgctcgccaggtctggctga
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