Brevibacillus parabrevis: PSE45_03670
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Entry
PSE45_03670 CDS
T08846
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bpab
Brevibacillus parabrevis
Pathway
bpab03030
DNA replication
bpab03410
Base excision repair
bpab03420
Nucleotide excision repair
bpab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bpab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSE45_03670 (ligA)
03410 Base excision repair
PSE45_03670 (ligA)
03420 Nucleotide excision repair
PSE45_03670 (ligA)
03430 Mismatch repair
PSE45_03670 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpab03032
]
PSE45_03670 (ligA)
03400 DNA repair and recombination proteins [BR:
bpab03400
]
PSE45_03670 (ligA)
Enzymes [BR:
bpab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PSE45_03670 (ligA)
DNA replication proteins [BR:
bpab03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PSE45_03670 (ligA)
DNA repair and recombination proteins [BR:
bpab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PSE45_03670 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSE45_03670 (ligA)
MMR (mismatch excision repair)
DNA ligase
PSE45_03670 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PSE45_03670 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
zf-IS66
Zn_ribbon_NUD
DUF763
Motif
Other DBs
NCBI-ProteinID:
WDV96066
LinkDB
All DBs
Position
680812..682830
Genome browser
AA seq
672 aa
AA seq
DB search
MDRLTAETKIKELVKRIERHNRLYYEQDRPEISDQEYDQLMRELTELENQFPELASPDSP
TQRVGGEPLPFFEKVVHKTPMLSLGNAFGEADIRDFDRRVRQAVGSQAVRYVAELKIDGL
AVSLHYENGMFVRGATRGDGSTGEDITQNLKTIRSIPLKLTKPLTLEVRGEAYMPKAAFD
KLNREREERGEALFANPRNSAAGSLRQLDPKIAASRQLDTFIYGIGDLQGETVESHSEGL
DLLESLGFKVNKERRVFEDVEELLAFIENWTEKRPTLPYEIDGMVIKVDSYSQQEELGFT
AKSPRWAVAYKFPAEEAITVLEGIEVSVGRTGSVTPTALLKPVSLAGTTVKRASLHNEDI
IREKGLLIGDHVVVKKAGDIIPEIIAVLPERRTGSEVPFAMPTHCPECGSELVRLEEEVA
LRCINPMCPALIREGMIHFVSRTAMNIDGLGEKVVAQLYRDDIIHSVADLYYLHQQRDVL
LGMERMGEKSVDNLLAAIEASKENSLERVLFGLGIRLVGAKAAKVLAEHFGHIDAIMQAT
EEELTQINEIGPKMAASLINYFAQPQAQAVIERLKAAGVNMEYKGIRVESGADLPFSGKT
IVLTGTLTQMSRQEAEEAIARLGGKVTSSVSKKTDLVIAGEKAGSKLEKAEKLGVAVMDE
AGFLEVLQTATT
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggatcgattgacggcggaaacaaaaatcaaagaattggtgaaacgaattgagcggcac
aaccgtctttactatgaacaggatcgacctgagatttccgatcaggaatacgatcaattg
atgcgggagcttaccgaactggaaaaccagtttccagaactggcttctccggattctccc
acccagcgcgttgggggggagcctttgccattctttgaaaaagtcgtacacaagacgccg
atgctcagtcttggcaacgcttttggggaagcagacatcagagattttgaccgccgtgtt
cgccaggccgtggggagccaggccgttcgctatgtggctgagctgaaaatcgatgggctt
gctgtgtccttgcactacgaaaacggtatgtttgtgcgcggagcgactcgtggagacggg
agcacaggcgaggacatcacccaaaacttgaagacgatccgctcgattccgctcaagctg
accaagccgctgaccttggaggtgcgaggcgaggcgtacatgccaaaagctgctttcgac
aagctgaaccgggagcgggaggagcgcggggaagcgctgtttgccaatccgcgcaactcg
gcagccggctcgctgcggcagctcgatccgaaaatcgctgcatcccgtcagctcgacact
tttatttacgggattggcgacttgcagggcgagacagtcgagtcccacagcgaagggctt
gacctgctcgaatctctaggcttcaaggtgaacaaggagcgccgcgtattcgaagacgtc
gaggaactgctcgccttcattgaaaactggacagaaaaacgcccgaccttgccatatgaa
atcgacggcatggtcattaaagtggacagctattcgcagcaggaagagctgggctttacg
gcaaaaagcccgcgctgggcggtcgcgtataagtttccggcggaagaagcgatcacggtg
cttgaaggcatcgaagtgtccgtaggcagaacgggaagcgtgacaccgacggcccttttg
aagccagtcagtttggcgggcacgacagtaaagcgtgcttctttgcacaacgaagacatc
atccgggaaaaaggcttgctgatcggcgatcatgtcgtcgtcaaaaaggcaggcgatatc
atcccggaaattatagcggtgctgccggagcgcagaacgggcagcgaagtgccttttgcc
atgccgacgcattgtccggagtgtggcagcgagctggtgcgcttggaggaagaagtggcc
ttgcgctgtatcaacccgatgtgtccggcattgatccgtgaaggcatgatccactttgtt
tcccgcacagcgatgaacattgacgggctgggcgaaaaagtggtggctcagctgtaccgc
gacgacatcattcacagcgtcgctgacctgtattatttgcaccagcagcgcgatgtgctg
ctggggatggagcgcatgggcgaaaagtcggtagacaatttgctggcagcgatcgaagcg
agcaaggaaaactcgctggaacgcgtcctgttcgggttaggcatccgcctggtcggagca
aaggcggcgaaggtgcttgccgagcattttggccatatcgatgccatcatgcaggcgaca
gaagaagaactgacgcaaattaacgagatcggcccgaaaatggctgcgagtctcatcaac
tatttcgctcagccgcaagcacaagctgtcatcgaaagattgaaggcagcgggagtgaac
atggagtacaaaggcattcgcgtcgagagtggcgccgacttgccgttctccggaaaaacg
attgtcctgaccggaacattgacccaaatgtcccgccaggaagcagaggaagcgattgcc
cgattgggtggcaaagtaacgagcagcgtcagcaagaaaaccgatctggtaattgcggga
gaaaaagctggctccaagctggagaaagcagaaaaattgggtgtggctgttatggatgaa
gccggattcctggaagttcttcaaacagcaacaacgtaa
DBGET
integrated database retrieval system
