Bradyrhizobium pachyrhizi: QA639_31255
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Entry
QA639_31255 CDS
T09303
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bpah
Bradyrhizobium pachyrhizi
Pathway
bpah03030
DNA replication
bpah03410
Base excision repair
bpah03420
Nucleotide excision repair
bpah03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bpah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QA639_31255 (ligA)
03410 Base excision repair
QA639_31255 (ligA)
03420 Nucleotide excision repair
QA639_31255 (ligA)
03430 Mismatch repair
QA639_31255 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpah03032
]
QA639_31255 (ligA)
03400 DNA repair and recombination proteins [BR:
bpah03400
]
QA639_31255 (ligA)
Enzymes [BR:
bpah01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QA639_31255 (ligA)
DNA replication proteins [BR:
bpah03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QA639_31255 (ligA)
DNA repair and recombination proteins [BR:
bpah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QA639_31255 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QA639_31255 (ligA)
MMR (mismatch excision repair)
DNA ligase
QA639_31255 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QA639_31255 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
WFU54096
LinkDB
All DBs
Position
complement(6569842..6571989)
Genome browser
AA seq
715 aa
AA seq
DB search
MATKAKKALVDVDKLTKAQARVELTRLALELEGHDKRYYQDDAPSVTDAEYDALRQRYNA
IEKRFPEFVTAESPSQKVGAAPSGRFRKVRHSLPMLSLDNAFAEADVVDFVGRITRFLKL
PDDKIDFSAEPKIDGLSMSLRYEGGELVTAATRGDGAEGEDVTANIRTLEDVPQKLKGRN
VPDVCEVRGEVYMTKKAFLALNERQKAAGDTIFANPRNSAAGSLRQKDPAVTASRPLGFF
AYAWGEMSAMPEDTQTGMIHWFERCGFKTNPLTKLCHSVEELIAFHRKIEEQRAELDYDI
DGVVYKVDRIDWQERLGFVSRTPRWAIAHKFPAERAMTVLRDIEIQVGRTGSFTPVGKLE
PVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDVVID
KRPKNAKEFHFPKKCPCPLHTDVVREETAAGEEGSRARCTGEFACPFQKVEHLILFVSRR
AFDIDGLGVKQLQYFFDEGWVKEPADIFTLQKRNAKLKLEDIEGYGETSVRNLFAAIDSR
RKIGLERFIYALGMRHVGETTALALARGYGSWDAFHDACLKVAKGDEEAMAEMDALDQIG
DTVIKSIADYFGESHNRGIVERLTGELDEIIDAEKPKSNSAVAGKIVVFTGSLEKMTRDE
AKATAERLGAKAAGSVSKKTDYVVAGPGAGSKLAEAQKHGVQVLTEDEWLKLIGE
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggccaccaaagccaagaaagcgctggtcgacgtcgacaagctcaccaaggcccaggcc
agggtcgagctgacccggctcgcgctcgagctcgaaggtcacgacaagcgctactatcag
gacgacgcgccgagcgtcaccgatgccgaatacgacgcgttgcggcagcgttacaatgcg
atcgagaaacgcttccctgaattcgtcaccgcggaatcgccgtcgcagaaggtcggcgcc
gcgccgtcggggcgcttcaggaaggtccggcattcgctgccgatgctgtcgctcgacaac
gcgttcgcggaagccgacgtggtcgacttcgtcgggcgcatcacgcgcttcctcaagctg
ccggatgacaagatcgatttctcggccgaaccgaagatcgacgggctctcgatgtcgctg
cgctacgagggcggcgagctcgtcactgcggcaacccgcggcgacggcgccgagggcgaa
gacgtcaccgccaacatccgcacgctcgaggacgtgccgcagaagctgaagggccgcaac
gtgcctgacgtctgcgaggtgcgcggcgaggtctacatgaccaagaaggcgttcctcgcg
ctcaacgagcggcagaaggcggccggcgacaccatcttcgccaatccgcgcaattcggcg
gccggctcgctgcggcagaaggatcccgcagtcactgcctcgcggccgctcggcttcttc
gcctatgcctggggcgagatgagcgcgatgccggaggatacccagaccggcatgatccac
tggttcgagcggtgcggcttcaagaccaatccgctgaccaaattgtgtcactcggtcgag
gagctgatcgcgttccatcgcaagatcgaggagcagcgcgccgagctcgactacgacatc
gatggcgtcgtctacaaggtcgatcgcatcgactggcaggagcggctcggcttcgtgtcg
cgcacgccgcgctgggcgatcgcgcacaaattcccggccgagcgcgccatgacggtgctg
cgcgacatcgagatccaggtcgggcgcaccggctcattcacgccggtcggcaagctcgag
ccggtcggtgtcggcggcgtgatcgtgcagaacgtcacgctgcacaatgaggactacatc
aagggcatcggcaacaagggcgaggtgctgcgcgaggggcgcgacatcaggatcggcgac
accgtggtgatccagcgcgccggcgacgtgatcccgcaggtcgtcgacgtcgtgatcgac
aagcggccgaagaacgcgaaggaattccacttcccgaagaaatgcccgtgcccgctgcac
accgacgtggtgcgcgaggagaccgcggccggcgaggagggctcgcgcgcccgctgcacc
ggcgagttcgcctgtccgttccagaaggtcgagcacctcattctgttcgtgtcgcgccgc
gccttcgacatcgatggtctcggcgtgaagcagttgcaatatttcttcgacgagggatgg
gtcaaggagccggctgatatcttcacgctgcaaaagcgcaacgcgaagctgaagctggag
gatatcgaaggctacggcgagacctcggtgcgcaatctgttcgccgcgatcgacagccgg
cgcaagattggcctggagcgcttcatctacgcgctcggcatgcgtcatgtcggcgagacc
accgcgctggcgctggcgcgcggctatggctcctgggacgcgttccacgatgcctgcctc
aaggtcgccaagggcgacgaggaagcgatggcggagatggatgcgctcgaccagatcggc
gacaccgtgatcaagagcatcgcggattatttcggcgagagccacaatcgcggcatcgtc
gagcggctgaccggcgagctcgatgagatcatcgacgccgagaagccgaagagcaattcg
gcggtggccggcaagatcgtggtgttcaccggatcgctcgaaaagatgacgcgcgacgag
gccaaggcgacggccgaacggctgggcgccaaggcggccggctcggtgtcgaagaagacc
gactatgtcgtcgcggggccgggcgccggctcgaagcttgccgaagcgcagaagcacggc
gtccaggtgctgaccgaggacgagtggctgaagctgatcggggagtag
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integrated database retrieval system
