Borrelia parkeri: X966_02785
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Entry
X966_02785 CDS
T03987
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bpak
Borrelia parkeri
Pathway
bpak03030
DNA replication
bpak03410
Base excision repair
bpak03420
Nucleotide excision repair
bpak03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bpak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
X966_02785 (ligA)
03410 Base excision repair
X966_02785 (ligA)
03420 Nucleotide excision repair
X966_02785 (ligA)
03430 Mismatch repair
X966_02785 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpak03032
]
X966_02785 (ligA)
03400 DNA repair and recombination proteins [BR:
bpak03400
]
X966_02785 (ligA)
Enzymes [BR:
bpak01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
X966_02785 (ligA)
DNA replication proteins [BR:
bpak03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
X966_02785 (ligA)
DNA repair and recombination proteins [BR:
bpak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
X966_02785 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
X966_02785 (ligA)
MMR (mismatch excision repair)
DNA ligase
X966_02785 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
X966_02785 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
PTCB-BRCT
HHH_5
HHH_2
DNA_ligase_A_M
DNA_ligase_ZBD
VtrA_C
Auto_anti-p27
PTSIIA_gutA
Motif
Other DBs
NCBI-ProteinID:
AHE62869
LinkDB
All DBs
Position
567217..569223
Genome browser
AA seq
668 aa
AA seq
DB search
MIKDIEDEILCLRDNIRKWNKEYYVDSSPSVSDLTYDKALLRLQDLESKYPEYKTLDSPT
LKFGSDLLNNFEEVKHSFPILSLDKAYDIKELLLWIEKMVLEGSSLGSYTGISVEPKIDG
CSIVLYYKDGILKRALTRGDGRVGNDVTENVRTIKNVPLSIDEKVELVLRGEIYITKENF
LKINHTLKNPYLNARNLASGILRRINSREVASFPLDIFVYDILYSSLGLSTNHDAFDKLK
KFGFKINPFCKFFGGKNLEEITNHVKKIEMQRNFLEYEIDGVVLKVDSFILREILGYTSH
HPKWSIAYKFESCTGVSKIVDIVVQVGRSGKITPVAHVEKVFVAGAFITNASLHNQDYID
SIGLNIGDVVAISRRGDVIPAVELVVEKLAIGSFKISSNCPSCKMVLIKEGSHLFCVNKH
CPYRIIEQIKYFCSKKCMNIVGLSGKTIEFLFEMKFISSEIELYTFNFDRLINLRGFDLK
RIDNLKRSISDSKGRPFRKLLLGMGIKELGANTILVLINNNLNSFDIISTLCKNKEAALA
KLLKIKGIGERIALNIIEAFNDKTILDKFIFFKELGFKLEECNTNYAVDDSFLFGKNFCI
TGSFEGYSRDILIEKITKKGAIFNRAVTKSLDFLLVGEKPGLKLKKANNLGIKTFGLSDI
KDFVDLDN
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaagatatagaagatgaaattttatgtttaagagataatatcagaaaatggaat
aaagaatattatgttgattcctcacccagtgtgagtgatttgacttatgataaagctctt
ttaagacttcaagatttggaaagtaagtatcctgaatataaaactttggattctcccact
cttaaatttggaagcgatcttttaaataattttgaagaggttaaacattctttccctata
ttgagtttggataaggcttatgatattaaggaattattattgtggattgagaaaatggtc
ttagaaggttctagtttggggtcttatactggcatctcagttgaacccaaaattgatggg
tgttcaattgttctctattataaagatggaatactgaagagagctttgactaggggagat
ggaagggttggtaatgatgttactgagaatgttagaacaattaaaaatgttcctttgtct
attgatgaaaaggttgaattggtattgaggggtgaaatttatattactaaggaaaatttt
ttgaaaataaatcacacattaaagaatccttatcttaatgctagaaatttagcctcaggt
atactaagaagaataaatagtagagaagttgctagttttcctttagatatttttgtttat
gatattttatattctagtttgggattgagtactaatcatgatgcgtttgataaacttaag
aaatttggatttaaaattaatcctttttgtaaattttttggtggtaaaaacttagaagaa
attactaatcatgttaaaaagatagagatgcaaagaaattttttagaatatgaaattgat
ggtgttgtgttgaaagttgatagctttattttaagggaaattttaggatatacttctcat
catccgaagtggtcaatagcttataaatttgaatcttgcacaggcgtaagcaaaattgtt
gacatagtcgttcaggttggccgcagtggcaaaattactcctgttgcacatgtggagaag
gtatttgttgcgggggcttttattactaatgcaagtcttcataatcaagattatatagac
tctattggcttgaatattggagatgttgttgcgatttcaagacgtggagatgtgattcct
gctgttgaattggtggtagaaaagcttgcgattggtagttttaaaatttctagtaattgt
ccttcatgtaaaatggttttaattaaagagggttcacatcttttttgtgtaaataaacat
tgtccttatcgaataattgagcaaataaaatatttttgtagtaagaaatgtatgaatatt
gtaggactttcagggaaaacaatagagttcctttttgaaatgaagtttatatcttcggag
attgagctttatacttttaattttgatagacttattaatttgaggggttttgatcttaag
agaatagataatttaaagcgttcaattagtgatagtaaaggtaggccatttagaaagttg
cttcttggtatgggaattaaggagcttggagcaaatacaatattggttttaattaataac
aatttaaactcgtttgatataattagtactctttgcaaaaataaagaggctgctcttgcc
aaacttttgaagattaagggaataggtgagaggatagctttaaatattattgaagctttt
aatgataagactattcttgataagtttattttttttaaagaattagggtttaaattggaa
gaatgtaatactaattatgctgtggatgattcttttttatttggcaaaaatttttgtatt
acaggttcttttgaagggtattctagagatattcttattgaaaagattactaaaaaaggt
gctattttcaatagggcagttactaagagtttagattttttacttgttggagagaaacct
ggattaaaattgaaaaaagccaataatttgggaataaaaacctttggtctttctgatatt
aaagattttgtggatttagataattaa
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