Bombus pascuorum (common carder bee): 132912573
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Entry
132912573 CDS
T09597
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
bpas
Bombus pascuorum (common carder bee)
Pathway
bpas03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bpas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
132912573
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpas03400
]
132912573
Enzymes [BR:
bpas01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
132912573
DNA repair and recombination proteins [BR:
bpas03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
132912573
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT
DNA_ligase_IV
BRCT_2
RNA_ligase
mRNA_cap_enzyme
bPH_3
Motif
Other DBs
NCBI-GeneID:
132912573
NCBI-ProteinID:
XP_060826072
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Position
12:complement(4245298..4252615)
Genome browser
AA seq
893 aa
AA seq
DB search
MNGTLASKIEFVELCGIFEKISKTRKSQISRKADILEQFFEKCRNMGRELKTEYPDMDVS
LFPILRLILPDLEREREAYNLKEKSLADLYIRIFCLGKNSKDAIKLKQYKIPTAKNITRC
NFADKAYRVLRNRFEREASHITIEQINFILDNLSLKRNETFKDLLKKSNALEFKWITRII
LKSLNLDIGTKKILQVFHSDANSLFDVSSNLRQICDTLYDPQLRYHHGIQVFSHFKPMLL
EECQIENVEKLFNGRKQYFVQCKYDGERSQIHMKDGKYKYFTRQGYDITNKPGFGETSSA
GFMSGVFGRLLNPQVKSVILDGELMGWHKERKLLGSKGMNYDVKKLTKDSPYQQCFVAFD
IIMHNDILLNNEPYEKRLEILKDVFKEEEGCLLLCKSTKVSRSEELCKIFNESIRNKEEG
IVVKKCDSKYKPNVRNGTDCYKIKAEYSEGLVHDIDLIILGGYYDRKLMGLVNSFLMGVA
STKPPGENPTKFLSVVSVNSGLSMNTLEELGRIFKDKWQTERPENVVPPKVEPNLWIRPE
NSIILTIKASEMICSNNYPTGYSLRFPRVIDVRTDKPWYDVCTTDNLKLLIKDTQPIQKL
TKREVSYEDIEEARESKVRKTKKQRSIKYEEKSMKPNIDDNPPVHLTRLFDDKEICVING
VDELPKEEIEEILVQHRANVVQNPLKENYCIIVGNVKTVRASCIIQSKKYDVVTLDWFRR
VTKKENWSSLQDFLPWDLICSRESTKQRLAQYYDDYYDHYTIDADEESLLRSFKKVEDME
QNVKLDYTEMKKIDQELFDSEISPYSLFRGIVGYFYDSSDLSKFEFHFMGGTIRETIDDS
VTNIFINNNSTGIELQNLIDNKSQASLTIIRSEWIRECFKQNTIIPYSVYLVQ
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgaatggaacattagccagtaaaattgaatttgtggaattgtgcggtatattcgagaaa
atctctaaaactaggaaatcacaaatatctaggaaagctgatattttggagcagttcttt
gagaaatgtcgtaatatgggtcgtgaattaaaaactgaatatccagatatggacgtttca
ctctttcctatattaagattaatcttaccagatcttgaacgagaacgtgaggcatataat
ttaaaagaaaagtctcttgccgatctttatattcgtatattttgtttagggaaaaacagt
aaggatgcaattaaacttaaacagtacaaaattccaactgcaaagaatattacacgttgc
aattttgcggataaagcttatcgggttttacgaaatcgttttgaacgtgaagcttctcat
atcacaatagaacaaatcaattttattctcgataatctatcgttaaaaagaaatgaaacg
ttcaaagatttattaaagaaatcaaacgcattagagtttaaatggataacacgaattatt
ctaaaaagtttgaatcttgatattggaacgaaaaagatattgcaagtttttcattcagat
gcaaattcattgtttgatgtatcatctaatttgcgacaaatttgtgacacattatatgat
cctcaattgagatatcatcatggtattcaagttttttctcatttcaagcctatgttatta
gaagaatgtcaaattgaaaatgtagagaaactttttaatggaagaaaacaatactttgtg
caatgtaaatatgatggcgaacgatctcaaatacatatgaaagatggcaaatataagtat
tttacaagacaaggatatgatattacaaataagcctggttttggggaaactagttctgca
ggttttatgagcggtgtatttggtcgattattaaatcctcaagtaaaatcagtcatttta
gatggtgaattaatgggttggcataaagaaaggaaattgttaggctcaaagggaatgaac
tatgatgttaagaagctcacaaaagatagtccttaccaacaatgttttgttgcatttgat
attattatgcataatgatattttacttaataatgaaccttatgaaaaaagacttgaaatt
ttaaaagatgtatttaaagaggaagaaggttgtcttttattatgtaaatctactaaagtt
tctagaagcgaggaattatgtaaaatattcaatgaaagtattaggaataaagaagaagga
attgtagtaaaaaaatgtgatagtaaatataaaccaaatgtacgaaatggtactgattgt
tataaaataaaagctgagtattctgaaggtttggtacacgatatagatttaattattctc
ggtggttattacgatagaaaacttatgggtttagtaaatagctttttaatgggtgtagct
tctacaaaacctcctggtgaaaatcctacaaaatttttatctgtagtatcagtcaacagt
ggtttatctatgaatacattggaagaacttggaagaatatttaaagataagtggcaaaca
gaacgacctgaaaatgtcgtgcctcccaaggttgagccaaatttatggattcgtcctgaa
aattccatcattttgaccataaaagcatcggaaatgatatgtagtaataattatccaacc
ggatacagtttacgatttcctagagttatagatgttagaactgataaaccgtggtatgac
gtttgtacaactgataatttgaaattattaattaaggatacgcaaccaattcagaaatta
acaaaacgagaagtatcttatgaagatatagaagaagcacgtgaaagtaaagtacgtaag
acaaagaaacaacgttcaataaaatatgaagagaaatcaatgaaaccaaacattgatgac
aatccaccggttcatcttacccgactttttgacgataaagaaatttgcgtgataaatggc
gtcgatgagttacctaaagaagagattgaagaaattcttgtgcaacacagagcaaatgtt
gtacaaaaccctttaaaagaaaattactgtattattgttggtaacgttaaaacggtaaga
gcaagttgcatcatacaaagtaaaaagtatgatgtggtaacattggattggtttagacgg
gttaccaaaaaagaaaattggtcgtcattacaagactttttaccatgggatttgatatgt
agtcgtgaatcaacgaaacaacgattagcacaatattacgatgattattatgatcactat
actatagatgctgacgaagagagtttattacgttcgttcaaaaaagtcgaagatatggag
caaaatgttaaacttgattatacagaaatgaaaaaaatagatcaagaattatttgatagt
gaaatatcaccttattctctatttcgtggtatcgtgggatatttttatgattcatcagat
ttatcaaaatttgaatttcattttatgggtggtactattagagaaactattgacgattct
gtgacaaatatttttatcaataataattccaccggtattgaactgcaaaatttaattgac
aataaatcccaggcatcgttaacaattattagaagtgaatggatcagagagtgctttaaa
caaaatacaattattccttattctgtatacctggtccaataa
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