Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110170049
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Entry
110170049 CDS
T05002
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bpec03036
]
110170049 (smchd1)
03400 DNA repair and recombination proteins [BR:
bpec03400
]
110170049 (smchd1)
Chromosome and associated proteins [BR:
bpec03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
110170049 (smchd1)
DNA repair and recombination proteins [BR:
bpec03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
110170049 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
FOXP-CC
Motif
Other DBs
NCBI-GeneID:
110170049
NCBI-ProteinID:
XP_020791330
LinkDB
All DBs
Position
Unknown
AA seq
1964 aa
AA seq
DB search
MQSNLSRRVCVYDRRFEGSKRKEEWLVTSDLDFKSFLRILSETFSVPLHEAFVLVTTERT
VLDAEKYSQLQDGATLYLMQREDQTLEVPTEELIYFTPHHDTVVESGTYKYYDSEGKKAL
PYALADLVDNSLSATVNNAAGRTIEIRMLFDESYGKPAVIVWDNGCGMTSKQLNNWAVYK
LSKFNKENGRFASDQGNYSRPGHVCRSLNSDISYFGVGGKQAAFYIGKTTRVISKSSSSP
DVHELILSKALFEKKEKNKEDTYSTTIYNRKPGESSHITKTVDRFLRDLITEEYDHQSFT
AVVITDVVKEHITFLKENFEVWTRQLAHIYHYYLHGPNGNIQGAVPKSSTLDSEQISKIN
ILVTLKTKKSSCVVNLRDIGTDLQSLYIKAAVSTFEFRACTNPEAGIVEGILRYHPFLYD
KETYPKDPDAQDAPDVLHGDVEENEYNTDINAQKQKKPVFECYWNGRLIPYTTVQDFDWC
SQPSKGSKVPIECYNRFSGVLFTDDTFKVTENKLTFIDLEQKLKNKDTIFTVVLKGQNQR
TNLQKEFSQWLQSCHEKFDKQVKFMNYQGTISRNDIPTKRNQFPWTTFSKIEWDGKIYQA
GDYIKSLKTAPIYNGKVNRFLLFGTHDHEGHVYGPGGQVEINLEPKGLYDKAKIIPLSKI
DSNATDEEIKKSINNDSAKLPDKLEVTWPKGNPWPDNATCPAGTVLGPINVKILNKKGDS
MSCLPSVGRGVLKKLSVVLRLVHHVPKGDQEILAVEADHSPKWNFWFKEIGNILALGKYT
LHLITIQTETKANEFGERRLPHFKLRFTIKEDVANQFDVAAIGSTLRIGVPFNISLRFKD
RHGHAVEPPPDLKPTLQCSGLDVTYEQVECRNIMYIKNVKVKGKVRNHLEPNLHDLKVTI
DGLREHSKTVTITVLPGNPHSIQVIPKENPVEVENGSTIKWSVMVQDEDGNPTATPKMTA
RCVVPHQPPANINCMAGIGEYVSKPINLSLTHGKPQSLQVRFSVPSQKGIEEVTREVLVL
PSKRVIRIKIYEKDACLELKNNEKIDWMAGAVLGNLYFMLYDEGDREVPITAEVASKIKA
NWTGNIDQKELMKGKLPDVTVPTKAHADQFYQVSYQDQSVTASFIIVPIPDVPAGLKVIL
PKCIARLGEMLPGNIILELVDRYDNVTKTLKPSCVNEIIVEGEDLDQKALKLKFEESSCS
VVVTGVRFISGTPGSREMSFTFGDFTYRTRLKVAAGIPAKLTLISGQAQFMNVLNGHGIP
TPFVIQLCDQWDNPSPDQRVVVKILASSELNMSINVSSQPVNAEGQASFTVTCVSGPKGS
YALNFKGIFKKEPIPGPSVNLTVLPDPNKPVSLEVEYDKRATFIAGELLPAFLVTVMSDE
GRPIITRQAVSMQYWKGDSRNPGSNTPIEFQCCEPKENEKKDIFYFREKPVPEHVGKYTI
QFFLHDPKNKITLCSDPILVNVVANRPMKLAPENPPPTQVVSYSEDIAKRMLVENMTLMI
MDQYGNPAGQGLNGVVKISIENLNSASRENVPLFEDKSINCRIKLENGKAHVSNLAIMKK
SPGVHGVTYMVLFRPEISPRIPGSLDSYEFHFSFSNDEENQKIHVALCRKRDAVKDAIIQ
IKKRQTQHTKLMEEYDGLLKKLSENEANLRNKLRNEWNEDLTENTSIEMVDRILHEKQLE
ARSIWNTPRRTCKIPCYSKGPDVIGKVGHLAYVMDDFEAWVISWHIRGDMDCIVTTTYAA
AKEILRLTNGKQQILPIEGINPSYKRPLLPLPHIQNGQVLFAPRGNPRYAADVLIYPDNR
ADCEIVFRTLLGRTILIDDLDSANHYRQSVVRCNVMCPTILTKQGERVSASGKFGGAQNK
APPMHQLEIFGAPLPEHFSSLQKNIEHLKQYRVALEKKLQQIKEQNDTFSILEPKIKKNR
ESLGIMDKQLQEIEIQLATPLKRVHDSGGETSGITTKRAKLGSK
NT seq
5895 nt
NT seq
+upstream
nt +downstream
nt
atgcagtccaatctctcccgacgagtgtgcgtttatgaccgccgatttgagggcagcaaa
cgaaaagaagaatggctggttacgagtgatctggattttaagagctttcttcgcattctg
tctgagacattttcagttccactccatgaagcgtttgttttggtcactacagagaggaca
gttcttgatgcagaaaaatactcgcaattacaagatggtgccactctatacttgatgcag
agagaggaccaaacactagaggtgcccacagaagagcttatttattttactcctcatcac
gatactgtggtggagagtggcacatataaatattacgacagtgagggcaagaaagctctc
ccatatgccctggctgatctggtcgacaactcactttctgccacagtcaataatgctgca
gggcgaacaatagaaatacgaatgctttttgatgaaagctatggaaaacctgctgtcatt
gtgtgggataatggatgtggtatgacttctaaacaactcaacaactgggcagtgtacaag
ctctccaaatttaacaaggaaaatggcagatttgcaagtgatcaaggcaattactctcgt
cctggacatgtttgtcgaagtctgaacagcgacatatcctactttggagtaggaggaaaa
caggcagctttctatattgggaagacaaccagggtcatcagtaaatcttccagctcccct
gatgtgcatgaacttattctgtccaaagcattatttgagaaaaaggaaaagaacaaagaa
gacacttacagcacaaccatctataatcgtaaacctggtgagtcctcacacattactaaa
actgtggaccgtttcctgcgtgacctcatcacagaagaatatgatcaccagagcttcact
gctgttgttattactgatgtcgtgaaagagcacatcacttttctcaaggagaattttgaa
gtgtggacgaggcagcttgcacacatataccactattatttacatggacccaatgggaat
attcaaggagcagtaccaaaatcaagcactctagattctgaacaaatctccaaaatcaac
attctggtcactctcaagacaaaaaagagttcttgtgtagttaatctcagagacattgga
acagacctacagagcttgtacataaaggctgctgtttctacatttgagttcagagcttgt
actaacccagaggcaggtatcgtggaggggatactacggtaccaccccttcctatacgac
aaggagacataccctaaagaccctgatgcccaggatgctcctgatgtcctgcatggagat
gttgaagaaaatgagtataatactgacatcaatgcccaaaagcaaaagaagccggtcttt
gaatgctattggaatggacgtcttattccatacacaacagtgcaagactttgattggtgc
agccagccttctaaaggatccaaagtaccgattgagtgttacaatcgcttctctggtgtg
ctcttcacagatgacacatttaaagtcactgagaataaacttaccttcatagacctggag
cagaaactcaaaaacaaagacacaatattcacggttgttttgaagggacagaatcaaaga
actaacctccaaaaagagtttagtcagtggctacaatcctgtcatgaaaaatttgacaaa
caagtgaagtttatgaactaccagggcacaatctcacggaatgatataccaaccaagagg
aaccagtttccatggaccacattctcgaaaatagaatgggatggcaaaatttaccaggcg
ggcgattatatcaagtctctaaaaaccgctcctatttacaatggtaaagtgaatcgcttt
ctgttgtttggaacacatgatcatgagggacatgtgtacggtcctggaggtcaggtggaa
attaatttggagcccaaaggactttatgataaagcaaaaatcatacctctgtccaaaatt
gacagtaatgcgactgatgaagaaatcaagaaaagcattaacaatgattctgcaaagctt
ccagacaaacttgaggtgacatggcctaagggcaacccatggccagacaacgcaacctgt
ccagctggaactgtgttaggaccaataaatgtaaagattctgaataagaagggggattct
atgtcctgcctgccgtccgtgggtcgtggagtgttaaaaaaactgtcagttgtgctcaga
ctagtgcatcatgttcctaagggagatcaagagattttagcagtggaagctgaccattca
ccaaagtggaatttttggtttaaagagatcgggaacattttggcactgggaaaatataca
ttgcatttaattaccattcaaactgagaccaaagccaatgaatttggagaaagacgtctt
ccacattttaaacttaggtttaccatcaaagaggatgtggcaaatcaatttgatgtggcc
gcaattggctcaacccttcgtattggagtgccttttaacatctctttgaggtttaaggac
agacacggtcatgctgttgaacctcccccagatttgaaacctacacttcagtgcagcggt
ttggatgttacgtatgaacaagtggaatgtagaaacatcatgtatattaaaaatgtcaaa
gtaaaaggaaaagtcaggaatcatctagagccaaatctgcatgacctaaaggtgacaata
gatggtctcagagagcactccaaaacagtgacgattactgtacttcctggtaacccacac
tccatccaagtaattcccaaagagaacccagtcgaggtggagaatggcagtacaattaaa
tggagtgttatggttcaagatgaggatggaaaccccactgcaacacccaaaatgactgct
cgatgcgttgttccacatcagccaccagccaacataaactgcatggctggaattggtgaa
tatgtgagtaaacccatcaatttgtcacttacccacggaaagccacaaagccttcaagtt
cgattcagtgttcctagtcaaaagggtatagaggaagtcacacgtgaggtgcttgtactg
cccagtaaaagagtcattcgtatcaagatctatgaaaaggatgcgtgtcttgaactgaaa
aacaacgagaaaatcgactggatggctggtgctgtgttgggaaacctgtacttcatgctt
tacgatgagggtgatagagaggttcctatcacggctgaggtggcttcaaagatcaaggct
aactggactgggaacatcgatcagaaagaactgatgaaaggcaagctccctgatgttaca
gtaccaaccaaagctcatgccgatcagttttaccaagtgtcataccaagaccagagtgtt
accgcctcctttatcattgtgcctattcctgatgtgcctgcaggattaaaagtaattctc
ccaaaatgcatagcaagacttggggaaatgttgcctggaaacataatcttagagcttgtg
gaccgatatgataatgttacaaagacattgaaaccatcctgcgtaaatgaaataatcgta
gagggtgaggatctggaccaaaaagctttaaaattaaagtttgaggagagtagctgttca
gttgtagtgactggtgtgcgcttcatctctgggactcctggttccagggagatgagtttt
acctttggagattttacataccgtaccagactcaaagtggctgcaggaattcctgcaaag
cttactcttatcagtggacaggcccagtttatgaatgttttgaatggtcatggcattccc
acaccatttgttatccaattgtgtgaccagtgggataatccctctccagatcagagggtt
gtggtaaaaatattggcctcatcagaattaaatatgagtataaatgtatcgtcacagcct
gtgaatgcagaaggacaggcttctttcactgtgacttgtgtgagtggaccaaagggatcg
tatgcgctgaactttaaaggaatctttaaaaaggaaccgatacctggaccatctgtaaat
ctgactgtcctccctgatcctaataaacctgtcagcttagaggtggagtatgacaaaagg
gccacttttatcgctggcgagttgcttcctgcatttttagtgactgttatgtcagatgaa
ggcaggccaatcataacccgacaagctgtgtctatgcaatattggaagggagactcaaga
aacccaggctcaaatacaccaattgaatttcagtgttgtgagcccaaggagaatgaaaag
aaggacattttttatttcagagaaaagcctgtccctgaacatgttgggaaatatactatc
cagttcttcttacatgaccctaaaaataaaataacattgtgtagtgatccgattcttgta
aatgtagtggcaaataggccgatgaagttggctcctgaaaatccacctccaacacaagtt
gtatcttatagtgaagacatcgccaaaagaatgttggtggagaacatgactctgatgata
atggatcagtatggcaacccagcaggtcaaggactgaatggggttgttaagatctctata
gaaaacttgaacagtgcaagcagagagaatgttccgttatttgaagataaaagcattaat
tgtagaattaagctagagaatggaaaggctcatgtttctaatcttgccataatgaaaaaa
agtcctggggtacatggggtcacatatatggtcctcttcagacctgagatttccccaaga
attcctgggagtctagattcttatgagtttcacttcagcttttccaatgatgaagagaac
cagaaaatacatgtggcattatgcagaaaaagggatgcagtcaaagacgctattatccaa
attaaaaaacgacagacacagcacacgaaacttatggaagagtacgatggtttattaaaa
aaattatctgagaatgaggcaaacctgcgaaataaactcagaaatgaatggaatgaggac
ttaacagaaaatacatctattgagatggttgacagaatcctacatgaaaagcagcttgaa
gccagaagcatttggaacacacccagaagaacttgcaaaataccgtgttacagtaaagga
ccagatgttataggaaaggttggtcacttggcatatgtgatggatgattttgaagcctgg
gtgatctcatggcacatcagaggtgacatggactgcattgtcaccacgacatatgcagct
gcaaaggaaatccttaggctcaccaatggcaagcagcagattttgcccatcgaaggaatt
aacccctcttataaacgccccctcttaccattaccccatatacaaaatggtcaggtactt
tttgctccaaggggaaatccacggtatgcggcagacgttctgatttacccagacaaccgc
gcagactgtgagattgtatttaggaccctcctggggaggaccatcttgattgatgaccta
gactctgcaaaccattacagacagtctgtggtgagatgcaatgtgatgtgccccaccatc
ctcaccaaacaaggggagagggtcagtgccagtggaaagtttgggggtgcacagaataaa
gctccacccatgcaccagttggagatctttggggcccccctacctgagcatttctcaagc
cttcaaaaaaatatagagcatctcaaacagtacagagtagctcttgaaaaaaagcttcaa
cagataaaggaacagaatgacacatttagtattttggagcctaaaatcaagaagaatagg
gagtctttggggattatggacaaacaactgcaagagattgaaatacaacttgcaacccca
ctcaaaagggttcatgacagcggtggtgaaacgtcgggcattactaccaaacgagcaaaa
ctgggatcaaaataa
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