Bacteroides pectinophilus: NQ488_06005
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Entry
NQ488_06005 CDS
T09080
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bpen
Bacteroides pectinophilus
Pathway
bpen03030
DNA replication
bpen03410
Base excision repair
bpen03420
Nucleotide excision repair
bpen03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bpen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NQ488_06005 (ligA)
03410 Base excision repair
NQ488_06005 (ligA)
03420 Nucleotide excision repair
NQ488_06005 (ligA)
03430 Mismatch repair
NQ488_06005 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpen03032
]
NQ488_06005 (ligA)
03400 DNA repair and recombination proteins [BR:
bpen03400
]
NQ488_06005 (ligA)
Enzymes [BR:
bpen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NQ488_06005 (ligA)
DNA replication proteins [BR:
bpen03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NQ488_06005 (ligA)
DNA repair and recombination proteins [BR:
bpen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NQ488_06005 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NQ488_06005 (ligA)
MMR (mismatch excision repair)
DNA ligase
NQ488_06005 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NQ488_06005 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
zf-C2H2_9
Ribonucleas_3_3
RUBY_RBDX
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
UWN96848
LinkDB
All DBs
Position
1284420..1286378
Genome browser
AA seq
652 aa
AA seq
DB search
MNRDIDRIKELVDILNKAGRAYYAQGQEIMSNYEYDALYDELAELEKKTGCVLASSPTVN
VGYEVLSELPKERHEKPMLSLGKTKSVDELVSWLGSQKGLLSWKMDGLTIVLTYNNGEMT
KAVTRGNGEVGEVITGNAKVFANVPVTIPYKGELILRGEAVIRYSDFEKINELIPEEGAK
YKNPRNLCSGSVRQLNSRITKERNVNFFAFTLVKADGVDFKNSRREQLEWLASQGFQTVE
YKEVTADNLRSTVSWFENAIKDNDFPSDGLVILYDDIAYGDSLGMTAKFPRNSLAFKWTD
ETAQTKLLEIEWSASRTGLINPVAVFEPVELEGTSVSRASVHNISIMEELELGVGDTIEV
YKANMIIPQIAKNLTRSGVKDIPQICPVCGMKTEIRSLNDAKSLYCTNPDCQAKHVKSFV
HFVARDAMNIDGLSEATLEKFIQHGMLHEFADLYHLDDYRDTIIDMDGLGVKSYDNMMAA
IDRSRHTTLPKLIYSLGIANVGLSNAKMIVKNTGTLDRILSATREELCAIDGVGEVIADS
FVSYFADDKHRQGLNRLVAELDIEAEEMASGENAVLADMVFVITGSLNHYSNRNELKELI
EKLGGKVTGSVTGKTSYLINNDSTSSSSKNKTAAKLGVPVITEDEFIKMIEE
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaacagggacattgacagaataaaagaacttgttgatattcttaataaagcaggcagg
gcatattatgcgcagggacaggagattatgtcaaactacgaatatgatgcgctgtatgat
gaacttgctgaacttgagaagaagaccggatgtgttcttgcatcaagtcctacagtcaat
gtcggttatgaagtattaagtgaacttcccaaagaacgtcatgagaagccgatgttaagc
cttggcaagactaagagcgttgatgagctggtatcatggcttggaagccagaaaggtctg
ctgtcatggaagatggacggattgacaatagtcctgacatacaataacggagagatgact
aaggcagtaaccagagggaatggtgaagtaggcgaagttattaccggtaatgctaaggta
tttgccaatgttcctgtgacaattccgtacaagggagagcttatactccgtggtgaagcg
gttataagatattcggattttgagaagattaatgagcttattccggaagagggagctaag
tataagaatccgcgtaatctctgcagtggatctgtaagacagcttaacagcagaatcaca
aaggaacgtaatgttaatttctttgcatttactttagttaaggcggacggcgttgatttt
aagaattcacgcagagaacagcttgagtggcttgcttcacagggctttcagactgtcgaa
tacaaagaggtcactgcagataatctgagaagtaccgtatcatggtttgagaatgcaata
aaggataatgattttccatcggatggtcttgttatactgtatgatgatattgcatatgga
gactcgcttggaatgacagcaaagttcccacgtaattcccttgcattcaagtggacggac
gagactgcgcagacgaagctgcttgagatagagtggagtgcatcaaggacggggcttatt
aatcctgttgcagtatttgaaccggtcgagcttgaaggaacaagcgtaagccgtgcaagt
gtccataatataagtattatggaagagcttgagcttggagtgggcgatacaatagaagta
tacaaagccaatatgataataccgcagatcgcaaagaatctgacaagaagcggagttaag
gatataccgcagatatgcccggtatgtggcatgaagacggagatcagaagccttaatgat
gctaagtcactgtattgcactaatccggactgccaggctaaacatgttaagagctttgtg
cattttgtagcacgcgatgcgatgaatatagacggactttcggaggcaactctcgagaag
tttatacagcatggcatgcttcatgaatttgcggatctgtatcatcttgatgattatcgt
gatacgataatagatatggacggattgggtgttaagtcttatgataatatgatggcagcg
atagacagatcgagacatacaacccttcctaagcttatatacagccttggaatagccaat
gtaggcctttccaatgctaagatgattgtaaagaatacaggcacactggacagaatactg
tcagcaacaagggaagagctgtgtgccatagacggagtcggagaggtcatagcagattca
tttgtatcatattttgcagatgacaagcacagacagggactcaacagacttgttgcggaa
cttgatattgaggcagaggagatggcatccggcgagaatgctgtacttgccgatatggta
tttgtcataacaggttcacttaaccattattcaaacaggaacgaactgaaggagcttatt
gaaaagctgggtggcaaggttacaggttcggttacgggcaagacaagctatcttattaat
aatgacagtacgtcgtcatcatcaaagaataagactgctgccaagcttggagttcctgtt
ataacggaagatgaatttattaagatgattgaagaataa
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