Bathycoccus prasinos: Bathy10g04210
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Entry
Bathy10g04210 CDS
T03089
Name
(RefSeq) hypothetical protein
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
bpg
Bathycoccus prasinos
Pathway
bpg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bathy10g04210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpg03019
]
Bathy10g04210
Messenger RNA biogenesis [BR:
bpg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
Bathy10g04210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA_25
RsgA_GTPase
AAA_28
AAA_23
nSTAND3
Zeta_toxin
TsaE
AAA_15
NACHT
VapE-like_dom
AAA_16
ATP-synt_ab
Motif
Other DBs
NCBI-GeneID:
19013497
NCBI-ProteinID:
XP_007510847
UniProt:
K8F0T2
LinkDB
All DBs
Position
10:779707..780693
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AA seq
328 aa
AA seq
DB search
MSDDALFLFLTTSIIYFKEEEEDRSDKEEVIKDKTSINIMTQKQQTTISLQVKNLSYAYP
MEPSEIIKDFTLELPKGSRCLLSGANGAGKSTLLQILAGKTMVAEDKVRVLGRPPFHDFN
LSCSGELSYLGSQWRRNVGSAGGDVPLAGDFPARQMIFGVENVDPERRERLIKLLDIDLD
WSMMALSDGQRRRVQICLGLLKPYEVLLCDEITVDLDILGRLDLLKFFEEECEERGATII
YATHIFDGMHDWMTHLAFISNGELKYGQGGRKEDIEEIKGIDHLLSTIEDWLRVDRDETK
ARKLLEGPKKRVDPYAHFGSRQMSYYGC
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacgacgcactttttcttttcctcactacgagtattatctactttaaagaagaa
gaagaagacagaagtgataaagaagaagtgataaaagataaaacgagtatcaacatcatg
acgcagaaacaacaaacaacaatatcgttacaagtgaagaacttatcgtacgcgtacccg
atggaaccgtccgaaattattaaagatttcacgttggaacttcccaaaggcagtcgatgt
ttactctccggcgcgaacggcgctgggaaatcgacgcttttacaaattctcgccgggaaa
actatggtcgcggaagacaaagttcgagtgttgggacgacctccgtttcacgatttcaac
ttgtcctgttccggcgagttatcctatttaggctcgcagtggcgacgaaacgtaggcagc
gcgggcggagacgtgccgttggcgggtgactttcccgcgagacaaatgatatttggcgtc
gaaaacgtagaccctgaaagaagagaaagactgattaaactgttagatattgatttagat
tggtcgatgatggcgttatcggacggccaaagacgacgggtgcaaatatgcttaggcttg
ttgaaaccgtacgaggtgctcttgtgcgacgaaatcacggtagatttagacattttagga
cgtctcgatttgttaaagttcttcgaagaggagtgcgaggagcgaggggcgacgattatt
tacgccacgcacatctttgatggcatgcacgactggatgacgcacttggcgttcatttca
aacggcgagttgaaatacggccaaggcggcagaaaggaagacattgaggaaataaaaggc
atcgaccatttgttatcgacgatcgaagattggttgagagtagacagagacgagacaaag
gcgagaaagttactcgaaggtccgaaaaaacgtgtcgacccgtacgcgcatttcgggagc
aggcaaatgtcatactacggatgttaa
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