Paraburkholderia phymatum: Bphy_1343
Help
Entry
Bphy_1343 CDS
T00704
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bph
Paraburkholderia phymatum
Pathway
bph03030
DNA replication
bph03410
Base excision repair
bph03420
Nucleotide excision repair
bph03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Bphy_1343
03410 Base excision repair
Bphy_1343
03420 Nucleotide excision repair
Bphy_1343
03430 Mismatch repair
Bphy_1343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bph03032
]
Bphy_1343
03400 DNA repair and recombination proteins [BR:
bph03400
]
Bphy_1343
Enzymes [BR:
bph01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Bphy_1343
DNA replication proteins [BR:
bph03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Bphy_1343
DNA repair and recombination proteins [BR:
bph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Bphy_1343
NER (nucleotide excision repair)
GGR (global genome repair) factors
Bphy_1343
MMR (mismatch excision repair)
DNA ligase
Bphy_1343
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Bphy_1343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
MctB
5_3_exonuc
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ACC70525
UniProt:
B2JID1
LinkDB
All DBs
Position
1:complement(1504744..1506795)
Genome browser
AA seq
683 aa
AA seq
DB search
MARTQVPDPATSAPAERALWLRDELERANYAYYVLDQPDLPDAEYDRLFKELQQIESEHP
DLITPDSPTQRVGGEVASGFRPVVHDMPMLSLNNGFSDEDIAAFDKRVSDTLHHTPVDYA
CELKFDGLAISLRYVDGQFTQAATRGDGATGEDVTENVRTIRSIPLKLKGKRVPKLVDVR
GEVLMFRRDFDKLNQRQRDAGQREFANPRNAAAGSLRQLDPKMTAQRPLSFFAYGIGVLD
GIEMPGTHSELLDWYHEMGLPVNSERAVVQGAEGVLGFFHKVGEKRDKLPYDIDGVVYKV
NRRDEQDALGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGAITPVARLEPVFVGGA
TVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLERRPPDAREFVMPTQCPVC
GSAIERLPDEAIARCSGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLVELNLVRTP
ADLFNLGFATLAELDRFAEKSAQNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLARH
FGSLDPIMSATVEELLEVNDVGPIVAEAIHQFFAEEHNRTVIEQLRAPGKVTWAEGPPAP
KAPQGVLAGKTVVLTGTLPNMGRDEAKELLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAK
AEELGIPVLDEDGMRKLLEGQTT
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaacccaagtccctgatcctgcaaccagtgcacctgccgagcgggcgttgtgg
ctgcgcgacgaactcgagcgcgcgaattacgcgtactacgtgctcgaccagccggacttg
cccgacgcggaatacgacaggctgttcaaggaactgcagcagatcgaaagcgagcatccc
gacctgatcacgccggattcgccgacgcagcgcgtcggcggcgaagtggcaagcggcttt
cggcccgtcgtgcacgacatgccgatgctgtcgctgaacaacggcttctcggacgaagac
atcgctgccttcgacaagcgcgtgtccgacacgctgcaccacacgcccgtcgactacgcg
tgcgaactgaaattcgacggactggccatttcgctgcgctacgtggatggccagttcacc
caggcagcgacgcgcggtgacggcgcgacgggcgaagacgtgacggagaacgtgcgcacc
attcgctcgattcccctgaagctcaagggcaagcgcgtgccgaaactggtcgacgtgcgc
ggcgaagtgctgatgttcaggcgcgatttcgacaagctgaaccagcgtcagcgcgacgcg
ggccagcgggagttcgccaacccgcgcaatgcagcagcgggcagcttgcgccagctcgat
ccgaagatgacggcgcagcgtccgttgtcgttctttgcatacggcatcggtgtgctcgac
ggcatcgagatgcctggcacgcacagcgaactgctcgactggtatcacgaaatgggcttg
cccgtgaacagcgagcgcgccgtggtgcagggcgccgaaggcgtgctcggtttcttccat
aaggttggcgagaaacgcgacaagctgccgtacgacatcgacggcgtcgtctacaaggtg
aaccgccgcgacgagcaggacgcgctgggtttcgtgtcgcgcgcgccacgtttcgcgctc
gcgcacaagtttcccgcgcaggaagcactgacaaagctgatcgccatcgacgtgcaggtc
ggcagaacgggcgcgattacgcctgtcgcgcggctcgagcccgtgttcgtcggcggtgcg
accgtgacgaatgcaactctgcataacgaggacgaagtgcgccgcaaggacatccgcatc
ggcgacaccgtcatcgtgcggcgcgcgggcgacgtgattccagaggtggtcggcgcgctg
ctcgaacggcgtccccccgacgcccgcgagttcgtgatgccgacgcaatgtcccgtatgc
ggctccgcgatcgaacggctgcccgacgaggcgatcgcgcgctgttcgggcggcctgttt
tgcccggcgcagcgcaagcaggcgctgtggcatttcgcgcagcgtcgcgcactggacatt
gacggactcggcgaaaaaatcatcgatcagcttgttgaactcaatctggtgcgcacgccc
gccgatctcttcaatctgggcttcgcgacactcgccgaactcgaccgcttcgccgagaag
tccgcgcagaacctcatcgactcgctggagaaggccaagcacacaacgctggcgcgcttc
atctatgcgctgggtatccggcatgtcggcgaatcgacggcgaaagatctggccaggcac
ttcggctcgctcgatcccatcatgagcgcgaccgtcgaagaactgctcgaagtcaacgac
gtcggccctatcgtcgcggaggcgatccatcagtttttcgccgaagagcacaaccgcacc
gtgatcgaacagctgcgcgcgcctggcaaagtcacctgggcggaaggtccacccgcgccg
aaagcgccgcagggtgtgttggcgggcaagacggtcgtgctgacaggcacgctgcccaac
atgggccgtgacgaggcgaaagagttgctggaggcggccggtgcgaaggtggccggttcg
gtgtcgaagaagaccgattacgtggtggccggtgcggaagcggggagcaagctcgcgaaa
gccgaggaacttggcatccccgtgctcgacgaagatggtatgcgtaagctcctggagggg
caaacaacatga
DBGET
integrated database retrieval system
