Candidatus Brocadia pituitae: BPIT_18090
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Entry
BPIT_18090 CDS
T07694
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bpit
Candidatus Brocadia pituitae
Pathway
bpit03030
DNA replication
bpit03410
Base excision repair
bpit03420
Nucleotide excision repair
bpit03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bpit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BPIT_18090
03410 Base excision repair
BPIT_18090
03420 Nucleotide excision repair
BPIT_18090
03430 Mismatch repair
BPIT_18090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpit03032
]
BPIT_18090
03400 DNA repair and recombination proteins [BR:
bpit03400
]
BPIT_18090
Enzymes [BR:
bpit01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BPIT_18090
DNA replication proteins [BR:
bpit03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BPIT_18090
DNA repair and recombination proteins [BR:
bpit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BPIT_18090
NER (nucleotide excision repair)
GGR (global genome repair) factors
BPIT_18090
MMR (mismatch excision repair)
DNA ligase
BPIT_18090
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BPIT_18090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
DNA_ligase_ZBD
Topo-V_HhH_2_2nd
Motif
Other DBs
NCBI-ProteinID:
BBO17517
LinkDB
All DBs
Position
2054879..2056894
Genome browser
AA seq
671 aa
AA seq
DB search
MISIKENIEKLRDTIRYHDRKYYVENNPEITDYEYDQRIKELQQLEKAYPHLITSDSPTQ
RVGGEPLTQFSTISHKIPMLSIDNTYSDKELREFDQRIKRMAGIDVHQDIEYVVELKIDG
VAVTLWYEKGLFAWGATRGDGFRGDEVTANLRTVRQIPLKLKPADRRQEIPPVLEIRGEI
YLPNKEFQRLNEEREEAGEPQFANPRNAAAGTLKLLDPRVTAKRRLRIFAYAAGYVEGCE
LKTHLQCLELIHCFGLPVNPHTRVCENIASVIQYCNEWDKKRDGLDYLVDGMVIKVNSLL
LHEQLGATSKAPRWAISYKYQPEQAVTNIEEIVTQVGKTGTITPVANLSPVLLAGTMVSR
ATLHNFEEISRKDIRAGDHVIVQKAGEIIPQVVSVVKEKRNGTERIFQEPAFCPECKGVV
RKDGVYLRCHNPFCRAQAKRRIQYFASRHAMDIEGFGPALVEQLVDKGFLKDYADIYYLR
HHDLVNLERMGEKSASNVMGAIGESKQRNLERLICGLGIPNVGIHTAEVLSEHFDTLDTL
AQATLEELEGIYEIGPVVAKSILEFFQDKHTQGIIERLKESGVNVRKQTIQQSGKNTKIS
GKSFLITGTLQNYSRKEAETLIKQQGGRIVSQISKKTNYLIVGEDPGSKLDKARVFNVPI
LDEEAFEKMIQ
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgatatccattaaagaaaatattgaaaagcttcgtgacacaatacgataccacgacaga
aagtactacgtagaaaataacccagagattactgattacgaatatgatcaacgtataaaa
gaattacagcaactcgaaaaggcatacccacaccttattacatctgattctcctacccag
cgagtagggggagaaccccttacgcagttttccacgattagccataaaattcccatgctg
agtatcgacaatacttattcagataaggaattgagagaatttgatcagcgcataaagaga
atggcaggtattgatgttcatcaggatattgaatacgttgttgaattaaagattgatgga
gttgcggtcacgctttggtatgaaaagggcttgtttgcgtggggggccaccaggggtgac
ggttttaggggtgatgaagtaacggcaaatttaagaacggttcggcaaattccactgaaa
ttaaaacctgctgacagaaggcaggaaatcccgcctgttttagagattcggggagagatt
tacctgcctaacaaagaattccagaggctgaatgaggaacgggaagaagcgggcgagccg
caattcgccaatccccgaaatgctgccgcaggtaccctgaaactgctcgaccctcgcgtt
acagcgaaaagacgtttgcgtatatttgcttatgcggctggatatgttgagggctgtgaa
ctcaaaactcacctgcagtgcctggaactgattcactgttttgggctgcctgtgaatccg
catacccgcgtatgcgagaatatcgcatcggttattcagtattgcaacgagtgggacaag
aagcgcgacggtcttgattatctggtagatggcatggttatcaaggttaattctcttctc
ttgcatgagcaattaggcgctacgagcaaggctccgcgctgggcgatttcttacaaatat
cagccagaacaggcggttacaaatattgaggagattgtcacgcaggttgggaagaccgga
acgataacacccgttgcaaatctttccccggttcttcttgcaggcacgatggtcagccgt
gctacgcttcataattttgaagagatttcccgaaaggatatacgggcaggagaccatgtg
atagtgcaaaaggccggagagattattccacaggtcgtctccgtagtaaaagaaaaacgg
aatggtacggaacggatttttcaagagccagcgttttgtcctgaatgtaagggcgtcgtc
cggaaagatggtgtatacctgcgctgccataatcctttttgccgggcacaggcgaaaagg
cgtattcaatactttgcaagccgccacgccatggatatagaagggtttggtccagcactt
gttgaacaattggttgacaaaggatttttaaaagattatgctgatatctactatctccgg
caccacgatttggtgaatttagaacggatgggcgaaaaatcagcctcaaacgtgatgggt
gctataggggaaagcaaacaacggaatttagaacgattaatttgtggcctggggatacct
aatgtaggtatccatacggcagaagtcttgtcggaacacttcgatacactcgatacgtta
gcacaggcaactctggaagaattggaagggatttatgaaatagggccggtagttgccaag
agcatccttgagttttttcaggacaaacacacgcagggaattatcgaaagactgaaggag
tctggtgttaatgtcagaaaacaaaccattcagcaatcaggaaaaaacacaaaaatttct
ggaaaatcttttctcattaccggcaccttgcaaaactattcccgcaaggaagcggagacg
ctcatcaaacagcagggaggccggatcgtatcacagataagcaaaaaaaccaattatctt
atcgtaggagaagaccctggctccaaacttgataaggcccgagtgttcaatgtcccgatc
ctggatgaagaagcctttgaaaaaatgatacaataa
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