Brachyspira pilosicoli B2904: B2904_orf557
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Entry
B2904_orf557 CDS
T02225
Symbol
dnlJ
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bpj
Brachyspira pilosicoli B2904
Pathway
bpj03030
DNA replication
bpj03410
Base excision repair
bpj03420
Nucleotide excision repair
bpj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bpj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B2904_orf557 (dnlJ)
03410 Base excision repair
B2904_orf557 (dnlJ)
03420 Nucleotide excision repair
B2904_orf557 (dnlJ)
03430 Mismatch repair
B2904_orf557 (dnlJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpj03032
]
B2904_orf557 (dnlJ)
03400 DNA repair and recombination proteins [BR:
bpj03400
]
B2904_orf557 (dnlJ)
Enzymes [BR:
bpj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B2904_orf557 (dnlJ)
DNA replication proteins [BR:
bpj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B2904_orf557 (dnlJ)
DNA repair and recombination proteins [BR:
bpj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B2904_orf557 (dnlJ)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B2904_orf557 (dnlJ)
MMR (mismatch excision repair)
DNA ligase
B2904_orf557 (dnlJ)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B2904_orf557 (dnlJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
HHH
RNA_ligase
HHH_3
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AFR69906
UniProt:
J9UC33
LinkDB
All DBs
Position
complement(544435..546426)
Genome browser
AA seq
663 aa
AA seq
DB search
MNLEEARKKIEQLTATINYHNKLYYTDDNPEIEDYEYDKLFRELENLEREFPELKKDDSP
TNKVGGTILEKFEKFEHPIAMYSLSNVMNEEEFLEFDNRMQKELNANNIKYTVENKFDGL
ALELIYEKGKLTVASTRGDGQVGENVSNNVKTMNNVPKSIKETKKLIVRGEALITKKDFE
ILNKEREELEEIPFANARNAASGGLRQLDSSESKKRRLKFFAYQIANYKDFDLTNEYKSM
EFLSELGFTVEGVHPNIDAKKVLETYYDIQEKRSKMDYEIDGLVIKVDDVKYQEKLGFLS
RAPRFAVAFKFKPEEKETVLKNIEVQVGRTGALTPVAKLEPVQVGGVTVSNVTLHNPNEI
KSKDIRIGDTVVVIRSGDVIPKIVRVVLEKRPSDSKVFEFPKKCPVCGGDTAVTDGDVIV
RCINEECPSKITRYIEYFVSKPAMNMERIGKEWIAVFTKSGLVKTPADLYKITRDDLFKF
ERMGEKLASYMLESIENSKNTTLKRFIYALGIRQVGETTADLLAKYFTSVENFKKATIDD
LQNIEGIGEISAKSIYDFLHNKKTLKLIDDLLDAGVNPVFEKLTTVESPLTGKNVVITGS
IEGFTRNSAKEAAERLGATVQSAVSKNTDILIVGEKAGSKLKKAQELGIQIMEADDFIKL
ANI
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgaacttagaagaagctagaaaaaaaatagaacaattaactgcaactattaactatcac
aataaactttactatacagatgataaccctgaaatagaagactatgaatatgataaacta
tttagagaattagaaaatcttgagagagagtttccagagttaaaaaaagatgatagccct
actaacaaggttggaggcactatactagaaaagtttgagaaatttgaacaccctattgca
atgtactctctttctaatgttatgaatgaagaagagtttttagagtttgacaatagaatg
caaaaagagcttaatgcaaataatataaaatacactgttgaaaataaatttgacggactt
gctttagagttaatatacgaaaaaggaaaacttactgttgctagcactagaggagacgga
caggttggagagaatgttagcaataatgtaaagacgatgaataatgttccaaaaagcata
aaagagacaaaaaaactcattgtacgcggagaggcactaataacaaaaaaagattttgaa
atcttaaacaaagagagagaagaactcgaagagataccttttgctaatgcaagaaatgca
gcatcaggaggattaagacaattagacagttctgaaagtaaaaaaagaagattaaaattc
tttgcttatcagattgctaattataaagattttgatttaactaatgaatataaatcaatg
gagtttttatcagaattaggctttacagtagaaggcgttcacccaaatattgatgccaaa
aaagtattagaaacttattatgatatacaagaaaaaagaagcaaaatggattatgagatt
gacggacttgtaataaaagttgatgatgttaagtatcaggagaaattaggatttttatca
cgagctccaaggtttgcggttgcgtttaagtttaagccagaagagaaagaaactgtatta
aaaaatattgaggttcaggttggacgtactggggcattaacacctgttgctaaattagag
cctgttcaggttggaggggttactgtttcaaatgttacacttcataaccctaacgagata
aaatcaaaagatataagaataggagatactgttgtagttatacgttcgggagatgttata
ccaaaaattgtaagagtagtattagaaaaaagaccttcagacagtaaagtttttgagttt
cctaaaaaatgtcctgtttgcggaggcgatactgctgtaactgatggagatgtaattgta
agatgtattaatgaagaatgtccaagcaagattacaagatatatagaatattttgtttca
aagcctgctatgaatatggagagaataggtaaagaatggattgcagtatttacaaaaagc
gggcttgttaaaactccagctgacctctataaaataacaagagatgatttatttaagttt
gagagaatgggagaaaaattagcatcttatatgcttgaatctattgaaaacagtaaaaac
actactttaaaaagatttatatatgcattaggtattcgtcaggttggtgaaactactgcc
gacttgcttgctaaatattttacttcggtagagaatttcaaaaaagctactattgatgat
ttacaaaatattgagggcataggagaaatcagtgctaaaagtatttacgattttcttcat
aataaaaagacattgaaattgatagatgatttacttgatgctggggttaatcctgtattt
gaaaaacttacaactgtagaatcacctctcactggaaaaaatgttgtaataacaggctct
atagaaggctttacaagaaattctgcaaaagaggctgccgagagattaggtgcaactgtg
caatctgcagtatcaaaaaacacagacattttaatcgtaggtgaaaaagcaggaagcaaa
ttaaaaaaagctcaagaattaggcattcaaataatggaagccgatgattttataaagctt
gctaatatatag
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