Beta proteobacterium CB: D521_1265
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Entry
D521_1265 CDS
T02483
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bprc
Beta proteobacterium CB
Pathway
bprc03030
DNA replication
bprc03410
Base excision repair
bprc03420
Nucleotide excision repair
bprc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bprc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D521_1265
03410 Base excision repair
D521_1265
03420 Nucleotide excision repair
D521_1265
03430 Mismatch repair
D521_1265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bprc03032
]
D521_1265
03400 DNA repair and recombination proteins [BR:
bprc03400
]
D521_1265
Enzymes [BR:
bprc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D521_1265
DNA replication proteins [BR:
bprc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D521_1265
DNA repair and recombination proteins [BR:
bprc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D521_1265
NER (nucleotide excision repair)
GGR (global genome repair) factors
D521_1265
MMR (mismatch excision repair)
DNA ligase
D521_1265
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D521_1265
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
FrhB_FdhB_C
Motif
Other DBs
NCBI-ProteinID:
AGG33833
LinkDB
All DBs
Position
complement(1243495..1245465)
Genome browser
AA seq
656 aa
AA seq
DB search
MQTELARLEHAYYVLDNPIVPDSEYDRLYRELIEIEVSHPEWITSDSLSQRVGGAALKEF
DSVTHAVPMLSLNNAFEDAELIAFDRRCREGLHIDQVDYAGELKFDGLAISLRYEHGSLV
RAATRGDGASGEDVTANIKTIRAIPLKLSGDNIPKVLEVRGEVFMYLKDFQKMNEQAAAQ
GEKEFANPRNAAAGSLRQLDSKITAKRPLSFFAYGLGALEPQSWLPKTHEELLNAYVKLG
LPVCSERRVLKSVEEILAFYNEVGAKRDELPYDIDGVVYKVNSFAEQAKLGFVSRAPRFA
LAHKFPAQEALTTVLGIDVQVGRTGAITPVARLSPVEVGGVTVTNATLHNEDEVKRKDVR
IGDTVSVRRAGDVIPEVVSVVKERRPVGATEFVMPKNCPVCDSHIERLADEAVARCSGGL
FCGAQRKQALIHFAHRRALDIEGLGEKIVDQLVDHNLVRTPADLYRLGFTAIANLERMGE
KSADNLIAAINQSRNTTLARFIFALGIRHVGETTAKDLANHYQSMHALMDASLEDLLTVK
DVGPVVANSITSFMEEAHNREVIEQLLASGMQLSVEEKVISAAVAGKTFVLTGTFPTMTR
DQAKDLLEKAGAKVAGSVSKKTDYVVAGADAGSKLTKAEELGVPVIDEVAMVDLLK
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
ttgcagaccgagttagcacgcctagagcatgcttactatgttctggataaccccatagtt
ccggatagtgagtacgaccgtctatatcgagagctcattgagatagaggtaagtcatcca
gaatggattacttcagactcactctcgcaaagagtgggtggtgcagctttaaaagagttt
gactccgttacccatgcagtgccgatgctttctttgaataatgcttttgaggatgctgag
ctgattgcttttgaccgccgctgccgtgagggtctccatattgaccaggtggattatgcg
ggtgagctgaaatttgatggtctagcgatctcactacgctatgagcatggctccttagta
agagcagccactcgtggtgatggtgctagcggtgaagatgtcactgccaacatcaaaacg
attcgggctattccgctgaagctctctggggacaatattccaaaagtattagaagtacgc
ggtgaagtctttatgtatctcaaagacttccagaaaatgaatgagcaagcagctgcccaa
ggtgagaaggagttcgccaaccctcgtaatgcagcagcgggtagtttgcgtcaattagat
tctaagatcaccgccaaaagaccgctatcgttctttgcttatggactcggtgcactagag
ccccaatcttggctaccaaaaacacacgaagaattactcaatgcttacgtaaaactcggc
ttaccagtttgttcagagcgccgcgttctcaaatccgtagaagagatattggccttttat
aacgaggttggtgccaaacgtgacgaacttccttatgacatcgatggcgtcgtctataag
gtcaactcttttgcggagcaggctaagctgggctttgtatctagagccccgcgctttgct
ttagcccataaatttccagcacaagaggctttgactactgttttgggcatcgatgtgcag
gtaggtcgcacgggcgccatcactccagttgcaagactttctcctgtagaggttggcggt
gttaccgtcactaacgctactctccacaatgaagatgaagtaaagcgcaaagatgtgcgt
attggcgataccgtttcagtgcgaagagcaggggatgttattccggaagtggtttcggta
gtcaaagaacgtcgaccagtaggtgccacagaattcgtaatgccaaagaattgtccggta
tgtgattcacatatcgagcgattggcagacgaggctgtagctcgttgtagtggcggctta
ttttgcggtgcacagcgcaagcaagcattaatccattttgcccacagaagagcattggat
attgaaggtctgggcgagaagattgttgatcaattagttgatcacaatctagtcagaact
ccggctgatctctatcgtctcggctttactgcaatcgccaacctagagcgcatgggcgag
aagtcggctgataacctcatcgctgcaatcaatcaatccagaaacacgacgctggcgaga
ttcatctttgcattgggtattcgtcatgtgggcgagaccactgccaaagacttggctaat
cactatcaatccatgcatgccctgatggatgccagtctcgaagacttactgacggttaaa
gacgttggccccgtagtagccaactctatcactagctttatggaagaagctcataaccgc
gaagtgattgagcaactcctggcctcaggcatgcagctctctgtagaagaaaaagtcatc
agcgcagccgtagctggaaaaacctttgtgctcacaggtacattcccaaccatgacaaga
gatcaagccaaggacctgcttgaaaaagcaggcgctaaagtcgctggctcagtctccaag
aaaaccgactacgtagttgctggagcagatgctggcagcaaactcactaaagctgaagag
ctaggtgttccagtgattgatgaagtggctatggtagatctccttaagtag
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