Burkholderia pseudomallei HBPUB10134a: DR55_2419
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Entry
DR55_2419 CDS
T03422
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bpsh
Burkholderia pseudomallei HBPUB10134a
Pathway
bpsh03030
DNA replication
bpsh03410
Base excision repair
bpsh03420
Nucleotide excision repair
bpsh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bpsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DR55_2419 (ligA)
03410 Base excision repair
DR55_2419 (ligA)
03420 Nucleotide excision repair
DR55_2419 (ligA)
03430 Mismatch repair
DR55_2419 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpsh03032
]
DR55_2419 (ligA)
03400 DNA repair and recombination proteins [BR:
bpsh03400
]
DR55_2419 (ligA)
Enzymes [BR:
bpsh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DR55_2419 (ligA)
DNA replication proteins [BR:
bpsh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DR55_2419 (ligA)
DNA repair and recombination proteins [BR:
bpsh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DR55_2419 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DR55_2419 (ligA)
MMR (mismatch excision repair)
DNA ligase
DR55_2419 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DR55_2419 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
MctB
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AIP50087
LinkDB
All DBs
Position
1:2750381..2752456
Genome browser
AA seq
691 aa
AA seq
DB search
MARSPVEPPASQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPD
LVTPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDKATDLAGT
VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIPLTLKGKR
IPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF
AYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGERRESLPYD
IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGAITPVARL
EPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSAVLDRRPADAQEFV
MPTECPECGSRIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLV
EQNLVRTPADLFNLGFSTLVALDRFAEKSARNLIDSLEKAKHTTLARFIYALGIRHVGES
TAKDLAKHFGSLDPIMHAPIDALLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVT
WPEGPPAPRAPQGVLAGKTVVLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGA
DAGSKLAKAEELGIPVLDEAGMHTLLEGHAR
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcccgatccccagttgaaccgcccgccagccagccggcgaagcgcgccgcgtggctg
cgcgccgagctcgagcgggcgaactacgcgtattacgtgctcgaccagccggacctgccc
gacgccgagtacgatcgcctcttcgtcgaactccaacggatcgaggccgagcaccccgat
ctcgtcacgcccgattcgccgacgcagcgcgtcggcggcgaggccgcgagcggcttcacg
ccggtcgtccacgacaagccgatgctctcgctcaacaacggctttgccgacgaggacgtc
atcgcgttcgacaagcgcgtcgccgacggcctcgacaaggcgaccgacctcgccggcacc
gtgaccgagcccgtcgaatacgcgtgcgagctgaagttcgacggcctcgcgatctcgctg
cgctacgagaacggccgcttcgtgcaggcgtcgacgcgcggcgacggcacgacgggcgaa
gacgtcaccgagaatatccgcacgatccgtgcgattccgctgacgctcaagggcaagcgg
ataccgcgcatgctcgacgtgcgcggcgaggtgctgatgttcaagcgcgatttcgcgcgg
ctgaacgagcgccagcgcgcggcgggccagcgcgagttcgccaatccgcgcaacgcggcg
gcgggcagcctgcggcagctcgattcgaagatcaccgcgtcgcggccgctttcgtttttc
gcatacggaatcggcgtgctcgacggcgccgacatgcccgacacgcacagcggcttgctc
gactggtacgagacgctcgggttgcccgtgaaccgggagcgcgcggtcgtgcgcggcgcg
gcgggcctgctcgcgttcttccattcggtgggcgagcggcgcgaatcgttgccgtacgac
atcgacggcgtcgtctacaaggtgaaccgccgcgacgagcaggatcggctcggcttcgtg
tcgcgcgcgccgcgcttcgcgctcgcgcacaagttccccgcgcaggaggcgctcacgaag
ctcatcgcgatcgacgtgcaggtcggccgcaccggcgcgatcacgccggtcgcgcgcctc
gagcccgtgttcgtcggcggcgcgaccgtcacgaacgcgacgctgcacaacgaggacgag
gtgcgccgcaaggacatccgcatcggcgacacggtcatcgtgcgccgcgcgggcgacgtg
attcccgaagtggtatcggccgtgctcgaccggcgtcccgccgacgcgcaggagttcgtg
atgccgaccgaatgcccggaatgcggatcgcggatcgagcgattgcccgacgaggcgatc
gcgcgctgcacgggcgggctgttttgccccgcgcagcgcaagcaggcgctctggcacttc
gcgcagcgccgtgcgctcgacatcgatgggctcggcgagaagatcatcgatcaactcgtc
gagcagaacctcgtgcgcacgccggccgatctgttcaatctcggcttctcgacgctcgtc
gcgctcgatcgcttcgcggagaaatccgcgcggaacctgatcgattcgctcgaaaaggcg
aagcacacgacgctcgcgcgcttcatttacgcgctcggcatccggcacgtcggcgaatcg
acggcgaaggacctcgcgaagcacttcggctcgctcgatccgatcatgcacgcgccgatc
gacgcattgctcgaggtcaacgacgtcgggccgatcgtcgccgaatcgatccatcaattc
ttcgccgaggagcacaatcgcacggtgatcgaacagttgcgcgcgcggggcaaggtcaca
tggcccgaagggccgcccgcgccgcgcgcgccgcaaggcgtgctcgcgggcaagaccgtc
gtgctcacgggcacgctgccgacgctcacgcgggaagccgcgaaggagatgctcgaggcg
gcgggcgcgaaagtcgcgggctcggtatcgaagaagaccgattacgtcgtcgcgggcgcc
gacgcgggcagcaagctcgcgaaagccgaggaactcggcattccggtgctggacgaagca
ggcatgcacacacttctggagggccacgcgcgatga
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