Burkholderia pseudomultivorans: WS57_28675
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Entry
WS57_28675 CDS
T04870
Symbol
ligA
Name
(GenBank) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bpsl
Burkholderia pseudomultivorans
Pathway
bpsl03030
DNA replication
bpsl03410
Base excision repair
bpsl03420
Nucleotide excision repair
bpsl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bpsl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
WS57_28675 (ligA)
03410 Base excision repair
WS57_28675 (ligA)
03420 Nucleotide excision repair
WS57_28675 (ligA)
03430 Mismatch repair
WS57_28675 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpsl03032
]
WS57_28675 (ligA)
03400 DNA repair and recombination proteins [BR:
bpsl03400
]
WS57_28675 (ligA)
Enzymes [BR:
bpsl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
WS57_28675 (ligA)
DNA replication proteins [BR:
bpsl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
WS57_28675 (ligA)
DNA repair and recombination proteins [BR:
bpsl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
WS57_28675 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
WS57_28675 (ligA)
MMR (mismatch excision repair)
DNA ligase
WS57_28675 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
WS57_28675 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
MctB
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AOI92647
LinkDB
All DBs
Position
1:complement(3555356..3557431)
Genome browser
AA seq
691 aa
AA seq
DB search
MARTPAEPPASQPDARAAWLRDQLQQANYAYYVLDQPDLPDAEYDRLFAELQQLEADHPE
FVTPDSPTQRVGGEVASGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGKAVDLAGS
VTDPVEYACELKFDGLAISLRYERGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGAD
VPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFF
AYGIGVLDGMPMPDTHSGLLDWYETLGLPVNRERAVVHGADGLLGFFRKVGEKRDGLPYD
IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL
EPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGAVLDRRPADAAEFV
MPTECPVCGSKIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLV
ELNLVRTPADLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGES
TAKDLAKHFGSLDPIMNASIDELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVT
WPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGA
EAGSKLAKAEELGIPVLDEEGLHQLLEGHAR
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaaccccagccgaaccgccagccagccagcccgacgcgcgcgccgcgtggctg
cgcgaccaacttcagcaggcgaactacgcctactacgtgctcgaccagcccgatctgccg
gacgccgaatacgaccggctgttcgccgagctgcagcagctcgaagccgatcatcccgaa
ttcgtgacgcccgattcgccgacgcagcgcgtgggcggcgaggtggcaagcggtttcacg
ccggtggttcacgatgcgccgatgctgtcgctgaacaacggcttcgcggacgacgacatc
gtcgcgttcgacaagcgtgtggccgatgcgctcggcaaggccgtcgacctggctggctcg
gtgacggacccggtcgaatacgcgtgcgaactgaagttcgacgggctcgcgatctcgctg
cgctacgagcgcggcgtgttcgtgcaggcgtcgacgcgcggcgacggcacgaccggcgag
gacgtgaccgagaatgtccgcaccatccgttcgattccgctgaagctgaagggcgccgac
gtgccggccgtgctcgacgtgcgcggcgaggtgctgatgttcaagcgcgatttcgcacgc
ctgaacgaacgccagcgcgcggccgagcagcgcgaattcgcgaacccgcgcaacgcggcg
gccggcagcctgcgccagctcgatccgaagatcaccgcgcagcggccgctgtcgttcttc
gcgtacgggatcggcgtgctcgacggcatgccgatgcccgacacgcacagcgggctgctc
gactggtacgagacgctcggcctgccggtgaaccgcgagcgcgcggtcgtgcacggcgcg
gacgggctgctcggctttttccgcaaggtcggcgagaagcgcgacgggctgccgtacgat
atcgacggcgtcgtctacaaggtgaaccggcgcgacgagcaggatcggctcggcttcgtg
tcgcgcgccccgcgtttcgcgctcgcgcacaagttccccgcgcaggaagcgctgacgaag
ctcgtcgcgatcgacgtgcaggtcggccgcaccggcgcgatcacgccggtcgcgcggctc
gagccggtgttcgtcggcggcgcgaccgtgaccaacgcgacgctgcacaacgaggacgaa
gtccgccgcaaggatatccgcatcggcgacacggtgatcgtgcggcgcgcgggcgacgtg
attccggaggtggtcggtgcggtgctcgaccggcgtccggccgatgcggccgaattcgtg
atgcccaccgagtgcccggtgtgcggctcgaagatcgagcgcctgcccgacgaggcgatc
gcgcgttgcacgggcgggctgttctgcccggcgcagcgcaagcaggcgctgtggcacttc
gcgcagcgccgcgcgctcgacatcgacgggctcggcgaaaagatcatcgaccagctcgtc
gagctgaacttggtgcgcacgccggccgatctgttcaatctcggcttcgcgacgctcgcc
gagctcgaccggttcgccgagaagtccgcgcagaacctgctcgattcgctcgagaaggcg
aagcacacgacgctcgcgcgcttcatctacgggctcggcatccgccatgtcggcgagtcg
accgcgaaggacctcgcgaagcacttcggttcgctcgacccgatcatgaacgcatcgatc
gacgagctgctcgaagtcaacgacgtcgggccgatcgtcgccgaatcgatccaccagttc
ttcgcggaagagcacaaccggaccgtgatcgaacagctgcgcgcgccgggcaaggtcacg
tggccggaagggccgcccgcgccgaaggcgccgcagggcgtgctggccggcaagacggtc
gtgctgaccggcacactgcccaacctcacgcgcgacgcggcgaaggagatgctggaggcg
gcgggcgcgaaagtggcgggttcggtgtcgaagaagacggattacgtggtcgcgggcgcc
gaggccggcagcaagctggcgaaagcggaggaactcggtattcccgtgctggacgaagaa
gggctgcaccaactcctggagggtcatgcgcgatga
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