Bordetella petrii: Bpet1706
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Entry
Bpet1706 CDS
T00637
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bpt
Bordetella petrii
Pathway
bpt03030
DNA replication
bpt03410
Base excision repair
bpt03420
Nucleotide excision repair
bpt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bpt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Bpet1706 (ligA)
03410 Base excision repair
Bpet1706 (ligA)
03420 Nucleotide excision repair
Bpet1706 (ligA)
03430 Mismatch repair
Bpet1706 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpt03032
]
Bpet1706 (ligA)
03400 DNA repair and recombination proteins [BR:
bpt03400
]
Bpet1706 (ligA)
Enzymes [BR:
bpt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Bpet1706 (ligA)
DNA replication proteins [BR:
bpt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Bpet1706 (ligA)
DNA repair and recombination proteins [BR:
bpt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Bpet1706 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Bpet1706 (ligA)
MMR (mismatch excision repair)
DNA ligase
Bpet1706 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Bpet1706 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
Motif
Other DBs
NCBI-ProteinID:
CAP42045
UniProt:
A9II69
LinkDB
All DBs
Position
1762859..1764952
Genome browser
AA seq
697 aa
AA seq
DB search
MAGQAGQAAQRVAALRNEIEQHNVRYYVHDDPSVSDAEYDALMRELIQLETDHPELVTPE
SPTQRVGAAPLAAFGSVRHAVPMLSLGNAFDPDEVQAFDRRVGDTLRGAGLLRVDQQPEY
FCELKLDGLAISLRYEDGVLVQAATRGDGQTGEDVTANVRTIRAVPLRLKGAAPRVLEVR
GEVLMNRAEFDRLNRSQAARDEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVH
GLPGRQTALFDEPAPGAREESTLPRDTHGAMLDWLAELGLPVNTRHNRRAVGAEGLLAFY
EQVGRERPGLPYDIDGVVYKVNSLPAQKVLGFVARAPRFALAHKFPAEEATTRLLDIEVQ
VGRTGAITPVARLQPVFVGGVTVTNATLHNEDEVRRKDVRIGDTVTVRRAGDVIPEVVGP
VPGKRPADAREFVMPVSCPVCGSAIERPEDEAIARCTGGLFCAAQRKQTLLHAAGRKALD
IDGLGEKLIDQLVDSGRVKSLADLYSLNAFELAALERMGKKSADNLVAAIDRARTPSLGR
LLFALGIRHVGETTARDVARHFGSIETIMDADEEALAGAPDVGPVVAGSIRRFFAEPHNR
EIIDLLKAQGVHPVPEAGPQGNTLAGKTFVLTGTMPNWTRDEATRHILAAGGKVSGSVSK
KTAYVVAGEEAGSKLAKAQELGVTVLDEDGLKALLGV
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggcgggacaggccgggcaggcggcgcagcgggttgccgcgctgcgcaacgaaatcgag
cagcacaatgtgcgctactacgtgcacgacgaccccagcgtttccgatgccgagtacgac
gcgctgatgcgcgagctgatccagctcgaaaccgatcaccccgaattggttacccccgag
tcgcccacccagcgcgtgggcgctgcgccgctggcggcctttggcagcgtgcgtcacgcg
gttcccatgctgtcgctgggcaacgccttcgatcccgacgaggtgcaggcattcgaccga
cgcgttggcgacacgctgcgcggcgcgggcctgctgcgggtcgaccagcagcccgaatac
ttctgtgaactgaaactcgacggcctggccatcagcctgcgctacgaagacggcgtgctg
gtgcaggcggccacgcgcggcgacggccagaccggcgaagacgtcactgccaacgtgcgc
accattcgtgccgtgcccctgcgcctgaagggcgcggcgccacgggtgctggaagtgcgc
ggcgaagtgctgatgaaccgcgccgaattcgaccgcctgaaccgtagccaggccgcgcgc
gacgagaaagtattcgtcaacccgcgcaacgcggccgccggcagcctgcgccagctcgac
ccccgcattaccgcccagcgcccgctgcgcttttttgcatacagctggggcgaagtgcat
ggcctgcccggccgccaaaccgcgctgttcgacgagcccgctccaggcgcacgtgaagag
tcgaccctgccgcgcgatacccatggcgccatgctcgactggctggccgaactgggcctg
ccggtcaatacccggcacaaccgccgcgcggtcggcgccgaaggcctgctggccttttac
gagcaggtcggccgcgagcgcccggggctgccgtacgacatcgacggcgtggtctacaag
gtaaattccctgccggcccagaaagtgctgggcttcgtggcgcgcgcgccgcgcttcgcg
ctggcgcacaagtttccggccgaagaggccaccacccggctgctcgacatcgaagtgcag
gtgggccgcaccggggctattacgccggtggcgcgtctgcagccggtattcgtgggcggg
gtgacggttaccaatgcaaccctgcacaacgaagacgaagtgcgccgcaaagacgtgcgc
atcggcgacactgtcaccgtgcgccgcgccggcgacgtgatcccggaagtcgtcgggccg
gtgcccggcaagcggccggccgacgcgcgcgaattcgtgatgccggtgtcttgcccggtg
tgcgggtcagccatcgagcgccccgaagacgaggccatcgcccgctgcaccggcgggctg
ttttgcgcggcccagcgcaagcagacgctattgcacgcggccgggcgcaaggccctggac
atcgacggactgggcgagaaactgatcgaccaactggtcgacagcggccgggtgaagtcg
ctggccgacctgtacagcctgaacgcctttgagctggccgcgctggagcgcatgggcaag
aaatcggctgacaacctggtggccgccatcgaccgggctcgcacgccttcgctgggaagg
ctgctgttcgccctgggcatccgccatgtcggcgaaaccaccgcgcgcgatgtggcgcgc
cacttcggcagcatcgaaaccatcatggatgccgacgaagaggccctggctggcgcaccc
gatgtaggacccgtggtggccggctcgatccgacgctttttcgccgagccgcacaaccgc
gagatcatcgacctgctcaaggcgcaaggcgtgcatcccgtgcccgaggccggcccgcag
ggcaataccctggccggcaagaccttcgtgctgaccggcaccatgcccaactggacccgc
gacgaagccacccgccatatcctggccgcgggcggcaaggtcagcggttcggtctcgaaa
aaaaccgcctatgtggtggcgggcgaagaagccggcagcaagctggccaaggctcaggaa
ctgggcgttaccgtgctcgacgaagacggcctgaaggcgctgctgggcgtgtag
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