Borrelia puertoricensis: bpuSUM_000554
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Entry
bpuSUM_000554 CDS
T08229
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bpur
Borrelia puertoricensis
Pathway
bpur03030
DNA replication
bpur03410
Base excision repair
bpur03420
Nucleotide excision repair
bpur03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bpur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
bpuSUM_000554 (ligA)
03410 Base excision repair
bpuSUM_000554 (ligA)
03420 Nucleotide excision repair
bpuSUM_000554 (ligA)
03430 Mismatch repair
bpuSUM_000554 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpur03032
]
bpuSUM_000554 (ligA)
03400 DNA repair and recombination proteins [BR:
bpur03400
]
bpuSUM_000554 (ligA)
Enzymes [BR:
bpur01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
bpuSUM_000554 (ligA)
DNA replication proteins [BR:
bpur03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
bpuSUM_000554 (ligA)
DNA repair and recombination proteins [BR:
bpur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
bpuSUM_000554 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
bpuSUM_000554 (ligA)
MMR (mismatch excision repair)
DNA ligase
bpuSUM_000554 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
bpuSUM_000554 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
HHH_2
RNA_ligase
DNA_ligase_ZBD
PTCB-BRCT
DNA_ligase_A_M
HHH_8
Motif
Other DBs
NCBI-ProteinID:
UPA18028
LinkDB
All DBs
Position
568741..570747
Genome browser
AA seq
668 aa
AA seq
DB search
MIKDIENEILCLRDKIKKWNKEYYVDSSPSVSDLTYDKAILRLQDLESKYPEYKTLDSPT
LKFGSDLLNNFEEVAHPLPILSLDKAYDIKELLLWIEKMVLEGSSLGAYTGISVEPKIDG
CSIVLYYKDGILQRALTRGDGRVGNDVTENIRTIKNIPLSIDEKVELVLRGEIYITKENF
LKINHTLKNPYLNARNLASGILRRINSREVASFPLDIFVYDILYSSLGLSTNHDAFDKLK
KFGFKINPFCKFFGGKNLEKITNHVKKIEMRRDSLEYEIDGVVLKVDSFILREILGYTSH
HPKWSIAYKFKSCTGVSKIVDIVVQVGRSGKITPVAHVEKVFVTGAFITNASLHNQDYID
SIGLNIGDVVAISRRGDVIPAVELLVEKLAIGSFKISSNCPSCKMTLIKEGAHLFCVNKH
CPYRIIEQIKYFCSKKCMNIVGLSGKTIEFLFEMKFISSEIELYTFNFDRLINLRGFDLK
RIDNLKRSISDSKGRPFRKLLLGMGIKELGANTILVLINNNLNSFDIIRTLCKNKEAALA
KLLKIKGIGERIALNIIEAFNDKTILDKFNVFKELGFKLEEYNTNYAVDDSFLFGKKFCI
TGSFKGYPRDVLIEKITKKGAIFNSAITKRLDFLLVGENPGSKLKIANNLRIKTFGLFDI
KDFVDLDN
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaagatatagaaaatgaaattttatgtttaagagataagatcaagaaatggaat
aaagagtattatgttgattcctcacccagtgtgagtgatttgacttatgataaagctatt
ttaagacttcaagatttggagagtaagtatcctgaatataaaactttggattctcccact
cttaagtttggaagcgatcttttaaataattttgaagaggttgcacatcctttacctata
ttgagtttggataaggcttatgatattaaggaattattgttgtggattgagaaaatggtt
ttagaaggttctagtttgggggcttatactggcatctcagttgagcccaagattgatggg
tgttcaattgttctctattataaagatgggatactgcagagagctttgactaggggagat
ggaagggttggtaatgatgttactgagaatattagaacaattaaaaatattcctttatct
attgatgaaaaggttgaattggtattgcggggtgaaatttatattactaaggaaaatttt
ttgaaaataaatcatacattaaagaatccttatcttaatgctagaaatttagcctcaggt
atattgagaagaataaatagtagagaagttgctagttttcctttagatatttttgtttat
gatattttatattctagtttgggattgagtactaatcatgatgcgtttgataagcttaag
aaatttggatttaaaattaatcctttttgtaaattttttggtggcaaaaacttagagaaa
attactaatcatgttaaaaagatagagatgcgaagagattctttagaatatgaaattgat
ggtgttgtgttgaaagttgatagctttattttaagggagattttaggatatacttctcat
catccgaagtggtcaatagcttataaatttaaatcttgcacaggcgtaagcaaaattgtt
gatatagtcgttcaggttggccgaagtggcaaaattactcctgttgcacatgtggagaag
gtatttgttacgggggcttttattactaatgcaagtttgcataatcaagattatatagat
tctattggcttaaatattggagatgttgttgcgatttcaagacgtggggatgtaattcct
gctgttgaattgctggtagagaagcttgcgattggtagttttaaaatttcgagtaattgt
ccttcatgtaaaatgactttaattaaagagggggcacatcttttttgtgtaaataaacat
tgtccttatcgaataattgaacagataaaatatttttgtagtaagaaatgcatgaatatt
gtaggactttcagggaaaacaatagaattcctttttgaaatgaagtttatatcttcggag
attgagctttatacttttaattttgatagacttattaatttaaggggttttgatcttaag
agaatagataatttaaagcgttcaattagcgatagtaaaggtaggccatttagaaaattg
cttcttgggatgggaattaaagagcttggagcaaatacaatattggttttaattaataac
aatttaaactcgtttgatataattaggactctttgcaaaaataaagaggctgctcttgcc
aaacttttaaagattaagggaataggtgagaggatagctttaaatattattgaagcgttt
aatgataagactattcttgataagtttaatgtttttaaagaattagggtttaaattggaa
gaatataatactaattatgctgtggatgactcttttttatttggcaaaaaattttgtatt
acaggttcttttaaagggtatcctagagatgttcttattgaaaagattactaaaaaaggt
gctattttcaatagtgcaattactaagcgtttagattttttacttgttggagagaatcct
ggatcaaaattgaaaatagctaataatttgagaattaaaacctttggtctctttgatatt
aaagattttgtggatttagataattaa
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