Bacillus pumilus SH-B9: UP12_03475
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Entry
UP12_03475 CDS
T04776
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bpus
Bacillus pumilus SH-B9
Pathway
bpus03030
DNA replication
bpus03410
Base excision repair
bpus03420
Nucleotide excision repair
bpus03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bpus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
UP12_03475 (ligA)
03410 Base excision repair
UP12_03475 (ligA)
03420 Nucleotide excision repair
UP12_03475 (ligA)
03430 Mismatch repair
UP12_03475 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpus03032
]
UP12_03475 (ligA)
03400 DNA repair and recombination proteins [BR:
bpus03400
]
UP12_03475 (ligA)
Enzymes [BR:
bpus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
UP12_03475 (ligA)
DNA replication proteins [BR:
bpus03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
UP12_03475 (ligA)
DNA repair and recombination proteins [BR:
bpus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
UP12_03475 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
UP12_03475 (ligA)
MMR (mismatch excision repair)
DNA ligase
UP12_03475 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
UP12_03475 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
RNA_pol_A_CTD
Nlig-Ia
BRCT_2
HHH_8
HHH_3
5_3_exonuc
CTD11
Motif
Other DBs
NCBI-ProteinID:
AMM96454
LinkDB
All DBs
Position
702347..704353
Genome browser
AA seq
668 aa
AA seq
DB search
MDKEAAKRRIEELHEILNQYNYEYHTLDRPSVPDAEYDARMRELISLEEEHTDLKAADSP
SQRVGGAVLDSFQKVRHGTPMLSLGNAFNEQDLLDFDRRVRQAVGEDIAYNVELKIDGLA
VSLRYENGVFVRGATRGDGTTGEDITENLKTIRSIPLKIKRPLSIEVRGEAFMPKPSFEA
LNEKRLQNEEEPFANPRNAAAGSLRQLDTKIAAKRNLDIFVYSIAELDEIGVESQSEGLD
LLDELGFKTNKERRTCQTIEEVIELIETLKTKRADFSYEIDGIVIKVDSLAQQEELGFTA
KSPRWAVAYKFPAEEVVTKLLDIELSVGRTGVITPTAILEPVKVAGTTVQRASLHNEDLI
KEKDIRLFDQVIVKKAGDIIPEVAGVLIDQRTGEEKPFHMPTECPECHSELVRIEGEVAL
RCINPECPAQIREGLIHFVSRNAMNIDGLGERVITQLFQEQLVSRVSDLYRLTKEELIQL
ERMGEKSVDNLLRSIEQSKENSLERLLFGLGIRFIGSKAAKTLAMHFGDIDQLKQATKEQ
LLEVDEIGEKMADAVVTYFEKEEILNLLNELKELGVNMTYTGPKPVKVEESDSYFAGKTI
VLTGKLEEMARNDAKEAIEALGGKLAGSVSKKTDLVIAGEAAGSKLTKAEELNIEIWDEA
KMLEELKK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggataaagaagcagcgaaacgccggatcgaggaactgcacgagattttgaaccaatac
aactacgaatatcatacacttgatcgtccaagtgttcctgacgctgaatatgatgcgcgg
atgcgtgagctgatctctttagaggaagagcacactgatttaaaagcagcggactctccc
tcgcaaagagtaggaggcgctgtgttagactccttccaaaaagtgcgtcacggcacaccg
atgctcagccttgggaatgcatttaatgaacaggaccttcttgattttgaccgccgggtt
cgtcaagcagtcggtgaagatatcgcatacaatgtcgagctgaaaattgatggactcgct
gtttctctccgttatgaaaatggcgtgtttgtccgaggtgccacacgtggagatgggaca
acaggtgaggatattactgaaaacctcaaaaccattcgttccatcccgctcaaaatcaaa
cgtcctttgtcaattgaagtgagaggcgaggcatttatgccaaaaccttcttttgaagca
ttaaacgaaaaaagattacaaaacgaagaagagccgtttgcaaacccgcgtaatgcggcg
gcaggttcacttcgtcagcttgatacaaaaattgcggcgaaacgaaaccttgatattttc
gtctacagtatagcggagcttgatgaaattggtgttgaatcgcaaagcgaaggacttgat
cttctcgacgaacttggctttaaaacgaacaaagaaagacggacgtgccaaacgattgag
gaagtgattgagctcattgaaacactgaaaacgaagcgtgccgacttttcatatgaaatc
gatggaattgtgatcaaagtcgattcgttagcacagcaagaagagctcggctttacagca
aaaagtccccgctgggcggttgcgtacaagtttccagctgaagaggttgtgacgaagctg
cttgatattgaactaagtgtcgggcgtacaggtgtcatcacaccaacggcgatccttgag
cctgtcaaagtagcaggaacgacagtgcagcgtgcttctcttcataatgaagatttgatc
aaagaaaaggatattcgcctttttgatcaagtgattgtgaaaaaagcgggcgatattatt
ccggaagtcgcaggcgtactgatcgatcagcgtacaggagaagaaaagccgtttcacatg
ccgactgaatgcccagagtgtcatagtgagcttgtgagaattgaaggcgaagtagcttta
cgctgcatcaatccagaatgtcctgcccaaatacgtgagggactcattcactttgtttcc
cgcaatgcaatgaacattgatgggcttggcgagcgtgtcattacacagcttttccaagaa
cagcttgtctctcgtgtgtccgatctttaccgattaacgaaagaagagctcattcaactt
gagagaatgggcgaaaaatctgtcgataatttactgcgttcgattgagcaatcgaaagaa
aactctttagagcgtttactatttggactcggtatccgatttattggctctaaagcggca
aagaccttggctatgcatttcggcgatatcgatcaattaaagcaagcgacgaaagaacaa
ttactcgaagtcgatgaaatcggtgaaaaaatggctgatgctgtcgtcacgtactttgag
aaagaagaaatactcaatctgctaaatgaactaaaagagcttggggtcaatatgacctat
acaggaccaaaaccggtgaaggttgaagaaagtgattcctattttgcaggcaaaaccatt
gtgctgacagggaaattagaagaaatggcgcgaaacgatgcaaaagaagcgatcgaagca
ttaggcggtaaactggcaggtagtgtgagtaaaaaaacagatttagtcattgctggagaa
gcagcgggaagtaagctgacaaaggcagaagaactcaatattgaaatttgggacgaagct
aaaatgctcgaggagctaaagaaataa
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