Bombus pyrosoma: 122567422
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Entry
122567422 CDS
T07776
Name
(RefSeq) DNA ligase 4-like isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
bpyo
Bombus pyrosoma
Pathway
bpyo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bpyo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
122567422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpyo03400
]
122567422
Enzymes [BR:
bpyo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
122567422
DNA repair and recombination proteins [BR:
bpyo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
122567422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT
DNA_ligase_IV
RNA_ligase
BRCT_2
bPH_3
Motif
Other DBs
NCBI-GeneID:
122567422
NCBI-ProteinID:
XP_043581832
LinkDB
All DBs
Position
LG5:8701382..8708728
Genome browser
AA seq
896 aa
AA seq
DB search
MNGTLASKIEFVELCGIFEKISETDTRKSRISRKADILEQFFEKCRNMGRELKTEYPDMD
VSLFPILRLILPDLEREREAYNLKEKSLADLYIRIFCLGKNSKDAIKLKQYKTPTAKNIT
RCNFADKVYWVLQNRFQREGSHITIEQINFILDNLSLKRNETFKDLLRKSNALEFKWITR
IILKSLNLGIGTKKILQVFHPDANSLFDVSSNLRQICDTLYDPQLRYHHDIQVFSHFKPM
LLEECQIENVEKLFNGRKQYFVQCKYDGERSQIHMKDGKYKYFTRQGYDITNKPGFGETS
SAGFMSSVFGRLLNPQIKSIILDGELMGWHKERKLLGSKGMNYDVKKLSKDSPYQQCFVA
FDIIMHNDILLNNEPYEKRLEILKDVFKEEEGCLLLCKSTKVSRSEELCKIFNESIRNKE
EGIVVKECDSKYKPNVRNGADCYKIKAEYSEGLVHDIDLIILGGYYGKKFMGLVNSFLMG
VASSTKTPGENPTKFLSVVSVNSGFSMNTLEELGRMFKDKWQTERPTNIVPPKVEPNLWI
RPENSIILTIKASEMICSNNYPTGYSLRFPRVTSVRTDKPWYDVCTTDNLKLLIKDTQPI
QKLTKREIPYEDIEEARESKVRKTKKQRSIKYEEESMKLNIYDSPPVHLTRLFDDKEICV
INGVDELPKEQIEEILVQHRANVVQNPLKENYCIIVGNVKTVRASCIIQSKKYDVVTLDW
FRRVTKKENWSSLQDFLPWDLICSRESTKRRLAQHYDDYYDHYTIDADEESLLRSFKKVE
DTEQDVKFDYTEMKKIDQELFDSEISPYSLFRGIVGYFYDSSDLSKFEFRFMGGTIRETI
DDSVTNIFINNNSTGIGLQNLIDNKSQASLTIIKSEWIGECFKQNTIIPYSAYLVQ
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atgaatggaacattagctagtaaaattgaatttgtggaattgtgcggtatatttgagaaa
atctctgaaacagatactaggaaatcacgaatatctaggaaagctgatattttggagcag
ttctttgagaaatgtcgtaatatgggtcgtgaattaaaaactgaatatccagatatggat
gtttcactctttcctatattaagattaatcttaccagatcttgaacgagaacgtgaggca
tataatttaaaagaaaagtctcttgctgatctttatattcgtatattttgtttggggaaa
aacagtaaggatgcaattaaactcaaacagtacaaaactccaactgcaaaaaatattaca
cgttgcaattttgcggataaagtttattgggttttacaaaatcgttttcaacgtgaaggt
tctcatatcacaatagagcaaatcaattttattctcgataatctatcgttaaaaagaaat
gaaacgttcaaagatttattaaggaaatcaaacgcattagagttcaaatggataacacga
attattctaaaaagtttgaatcttggtatcggaacgaaaaagatattgcaagtttttcat
ccagatgcaaattcattgtttgatgtatcatctaatttgcgacaaatttgtgacacatta
tatgatcctcaattgaggtatcatcatgatattcaagttttttctcattttaagcctatg
ttattagaagaatgtcaaattgagaatgtagagaaactttttaatggaagaaaacaatac
tttgtgcaatgcaaatatgatggcgaacgatctcaaatacatatgaaagatggcaaatat
aagtattttacaagacaaggatatgatattacaaataagcctggttttggggaaactagt
tctgcaggttttatgagcagtgtatttggtcgattattaaatcctcaaataaaatcaatc
attttagatggtgaattaatgggttggcataaagaaaggaaattgttaggctcaaaggga
atgaactatgatgttaagaaactctcaaaagatagtccttatcaacaatgttttgttgca
tttgatattattatgcataatgatattttacttaataacgaaccttatgaaaaaagactt
gaaattttaaaagatgtatttaaagaggaagaaggttgccttttattatgtaaatctact
aaagtttctagaagcgaggagttatgtaaaatattcaatgaaagtattaggaataaagaa
gaaggaattgtagtaaaagaatgtgatagtaaatataaaccaaatgtacgaaatggtgct
gattgttataaaataaaagctgagtattctgaaggtttggtacacgatatagatttaatt
attcttggcggctattacggtaaaaaattcatgggtttagtaaatagctttttaatgggc
gtagcttcttctacaaaaactcctggtgaaaatcctacaaaatttttatctgtagtatca
gtcaacagtggtttttctatgaatacattggaagaactcggaagaatgtttaaagataag
tggcaaaccgaacgaccgacaaatattgtgcctcccaaggttgagccaaatttatggatt
cgtcctgagaattccatcattttgaccataaaagcatcggaaatgatatgtagtaataat
tatccaaccggatacagtttacgatttcctagagttacaagtgttagaactgataaaccg
tggtatgacgtttgtacaactgataacttgaaattattaattaaggatacgcaaccaatt
cagaaattaacaaaacgagaaataccttatgaagatatagaagaagcacgtgaaagtaaa
gtacgtaagacaaagaaacaacgttcaataaaatatgaagaggaatcaatgaaactaaac
atttatgacagtccaccggttcatcttactcgactttttgacgataaagaaatttgcgtg
ataaatggcgtcgatgagttacctaaagaacagattgaagaaattcttgtgcaacacaga
gcaaatgttgtacaaaaccctttaaaagaaaattactgtattattgttggtaacgttaaa
acggtaagagcaagttgcatcatacaaagtaaaaagtatgatgtggtaacattggattgg
tttagacgagttaccaaaaaagaaaattggtcgtcattacaagactttttaccatgggat
ttgatatgtagtcgtgaatcaacaaaacgacgattagcacaacattatgacgattattat
gatcactatactatagatgctgacgaagagagtttactacgttcgttcaaaaaagtcgaa
gatacggagcaagatgttaaatttgattatacagaaatgaaaaaaatagatcaagaatta
tttgatagtgaaatatcgccttattctctatttcgtggtatcgtgggatatttttatgac
tcatcagatttatcaaaatttgaatttcgttttatgggtggtactattagagaaactatc
gacgattctgtgacaaatatttttatcaataataattccaccggtattgggctgcaaaat
ttaattgacaataaatcccaggcatcgttaacaattattaaaagcgaatggatcggagag
tgctttaaacaaaatacaattattccttattctgcatacctggtccaataa
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