Bradyrhizobium quebecense: J4P68_0008520
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Entry
J4P68_0008520 CDS
T07890
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bqb
Bradyrhizobium quebecense
Pathway
bqb03030
DNA replication
bqb03410
Base excision repair
bqb03420
Nucleotide excision repair
bqb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bqb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J4P68_0008520 (ligA)
03410 Base excision repair
J4P68_0008520 (ligA)
03420 Nucleotide excision repair
J4P68_0008520 (ligA)
03430 Mismatch repair
J4P68_0008520 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bqb03032
]
J4P68_0008520 (ligA)
03400 DNA repair and recombination proteins [BR:
bqb03400
]
J4P68_0008520 (ligA)
Enzymes [BR:
bqb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J4P68_0008520 (ligA)
DNA replication proteins [BR:
bqb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J4P68_0008520 (ligA)
DNA repair and recombination proteins [BR:
bqb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J4P68_0008520 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J4P68_0008520 (ligA)
MMR (mismatch excision repair)
DNA ligase
J4P68_0008520 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J4P68_0008520 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
Nlig-Ia
PTCB-BRCT
VCPO_N
Motif
Other DBs
NCBI-ProteinID:
UGY04772
LinkDB
All DBs
Position
complement(1702518..1704668)
Genome browser
AA seq
716 aa
AA seq
DB search
MAKTAKEKTLTGVDKLTKAQAKVEHQRLTAELKVHSEAYYERDAPQISDAEYDALKLRYR
QIEERFPDLVSLFSESYQVGAAPARGFKKIRHAIPMLSLDNAFAEQDVEEFVSSVRRFLK
LKDDEKVVFSAEPKIDGLSMSLRYQGGELVTAATRGDGAEGEDVTANIRTLEDVPPKLKG
RNIPDVCEVRGEVYMTKKAFLELNERQKAAGDTIFANPRNSAAGSLRQKDPAITASRPLG
FFAYAWGEMSAMPEDTQTGMIHWFERCGFKTNPLTKLCRSVDELIAFHRKIEEQRAELDY
DIDGVVYKIDRIGWQQRLGFVSRRPRWAIAHKFPAERAMTKLIDIVIQVGRTGSLTPVGK
LEPIGVGGVIVQNVTLHNEDYIKGIGGKGEILRGGRDLRVGDIVVVQRAGDVIPQIVDVV
ADKPRGKEKYRFPTECPCELHTPVVREETAAGEEGSRARCTGEFACPFQKIEHLILFVSR
RAFDIDGLGVKQLQYFFDEGWVKEPADIFTLPKRNAKLKLEDIEGYGETSVRNLFAAIDS
RRRIGLERFIYALGMRHVGETTALALARGYGSWEAFHDACLKVAKGDEEAIAEMDALDQI
GDTVIKSIADYFGESHNRGIVERLTRELDEIIDAEKPKSNSAVAGKTVVFTGSLEKMTRD
EAKATAERLGAKAAGSVSKKTDYVVAGPGAGSKLAEAQKHGVQVLTEDEWLKLIGE
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaacagcaaaagagaaaacactcaccggcgtcgacaagctcaccaaggcacag
gccaaggtggagcatcagaggttgacggccgaattgaaggtacacagtgaggcctactac
gaacgagatgctccacaaatttctgatgccgaatatgatgcgttaaagctgcgatacagg
cagattgaggagcggttccccgacttagtttcgctgtttagcgagtcttatcaggtgggc
gccgcccctgctcgggggttcaagaagatacgccatgcgatccctatgctctcgctagac
aatgccttcgctgagcaagatgttgaggagttcgtttcatccgttcgcagatttctcaag
ctcaaggatgacgagaaggtagtgtttagtgccgagccgaagatcgacggcctctcgatg
tcgctgcgctatcaggggggcgagctcgtcacggcagcgacccgcggcgatggcgcggaa
ggtgaagacgtcacggccaatatccgcacactggaggacgtgccgccaaagctgaagggc
cgcaacatcccagatgtctgcgaggtacgcggcgaggtctatatgaccaaaaaggcattc
cttgagctgaatgagcggcagaaggccgctggtgacaccatctttgccaacccgcgcaat
tcagcggcgggctcgctgcggcagaaggacccggcgatcaccgcctcgcggccgctcggc
ttcttcgcctatgcttggggtgagatgagtgcgatgcccgaggacacgcagaccgggatg
atccactggttcgagcggtgtggcttcaagaccaatccgctaaccaaattgtgtcgctcg
gttgatgagctgatcgccttccatcgcaagatcgaggagcagcgcgccgagcttgactac
gacatcgacggcgtcgtttacaagatcgatcgcatcggctggcagcaacgactgggtttc
gtatctcgtcgcccgcgctgggcaatcgcgcacaaattcccggccgaacgtgcgatgacc
aaattgatcgacattgttatccaagtcggacgaacaggttcgctcactcccgtaggcaag
ctggagccgatcggggttggtggcgtcattgtgcagaatgtgactctgcataacgaagac
tacatcaaaggtattggtggaaagggtgaaattctacgaggtgggcgcgatctccgcgtt
ggagacatagtggttgtccaacgagccggtgatgtgattccgcaaatcgttgacgttgta
gcggacaagccccgtggaaaagaaaagtacagatttccgactgagtgcccttgcgagcta
cacactcctgtggtgcgtgaggaaaccgcggccggcgaggagggctcgcgcgcccgctgc
accggcgagttcgcttgtccgttccagaagatcgagcacctcattctgttcgtgtcgcga
cgggcgttcgacatcgacggcctcggcgtgaagcagctgcaatacttcttcgacgagggc
tgggtcaaggagcccgccgacatcttcacgctgccgaagcgaaacgccaagctgaagctc
gaggacatcgagggctatggcgaaacctcggtgcgcaatctgttcgccgcgatcgacagc
cgccgccggatcgggctggagcgcttcatctatgcactcggcatgcgccatgtcggggag
accacggcgctggcgctcgcgcgcggttacggctcgtgggaggcgtttcacgatgcctgc
ctcaaggtcgccaagggcgacgaggaggccatcgccgagatggatgcgctcgaccagatc
ggcgacaccgtgatcaagagcatcgcggactatttcggcgagagccataatcgcggcatc
gtcgagcgtctgaccagggagctcgacgagatcatcgatgccgagaagccgaagagcaat
tcggcggtggccggcaagaccgtggtgttcaccggctcgctcgagaagatgacgcgcgac
gaggccaaggcgaccgccgagcggttaggggccaaggcggcaggttcagtgtcgaagaag
accgactatgtcgtcgcgggaccgggcgccggctcgaagcttgccgaggcccagaagcac
ggcgttcaggtgctgaccgaagacgagtggctgaagctgatcggggagtga
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