Bacillus amyloliquefaciens LL3: LL3_00706
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Entry
LL3_00706 CDS
T01835
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bql
Bacillus amyloliquefaciens LL3
Pathway
bql03030
DNA replication
bql03410
Base excision repair
bql03420
Nucleotide excision repair
bql03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bql00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LL3_00706 (ligA)
03410 Base excision repair
LL3_00706 (ligA)
03420 Nucleotide excision repair
LL3_00706 (ligA)
03430 Mismatch repair
LL3_00706 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bql03032
]
LL3_00706 (ligA)
03400 DNA repair and recombination proteins [BR:
bql03400
]
LL3_00706 (ligA)
Enzymes [BR:
bql01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LL3_00706 (ligA)
DNA replication proteins [BR:
bql03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LL3_00706 (ligA)
DNA repair and recombination proteins [BR:
bql03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LL3_00706 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LL3_00706 (ligA)
MMR (mismatch excision repair)
DNA ligase
LL3_00706 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LL3_00706 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
BRCT_2
5_3_exonuc
HHH_8
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AEB62253
LinkDB
All DBs
Position
666661..668670
Genome browser
AA seq
669 aa
AA seq
DB search
MMDKETAKHRADELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPELRTPDS
PTQRVGGAVLESFQKVQHGTPMLSLGNAFNDDDLRDFDRRVRQAVGDGVAYNVELKIDGL
AVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRNLSIEVRGEAFMPKQSFE
ALNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVETQSQGL
DFLDELGFKTNQERKQCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLDQQEELGYT
AKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSRASLHNEDL
IKEKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNMPTVCPECESELVRIEGEVA
LRCINPECPAQIREGLIHFVSRNAMNIDGLGERVITQLFREHLVRNVADLYKLTKEQVIR
LERMGEKSTDNLISSIQKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKQATEE
ELLAVDEIGEKMADAVITYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKT
IVLTGKLEELSRNEAKTQIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWDE
AQLLGELKK
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgatggacaaagaaacagcgaaacaccgggcagatgaattgcgccgcaccatcgatcag
tacagttacgaatattacaccttagatgaaccgagcgtaccggattccgagtacgacaga
ctgatgcaggagctgattgcgatagaagaagagcacccggagctcagaacgcctgactcg
cccacacagcgggtcgggggagcggtgcttgaatcatttcaaaaggtgcagcacggcacg
ccgatgctcagtctcggcaacgcatttaacgatgatgatcttcgcgattttgaccgccgc
gtccgtcaggctgtcggggacggcgtcgcttacaatgtggagctgaaaatagacggtctt
gctgtttctctccgttatgaagacggctatttcgtcagaggcgcgacaagaggagacgga
acaacgggcgaagatattacggaaaacttaaaaacgatccgcaacattccgctgaaaatg
aaacgaaacctttccatagaagtgcgcggagaggcgttcatgccgaaacagtcatttgaa
gcgctcaatgaagaacggctgaaacatgaagaggagccgttcgccaatccccggaatgct
gctgcgggctcactcagacagctcgatccgaaaattgcagcgaaacgaaatcttgacatc
ttcgtctacagtatagcggagcttgacgaaatgggtgtggaaacacagagtcagggcctg
gattttctggatgagctcggttttaaaacaaaccaggaacggaaacaatgcgccacgata
gatgaagtaattgaaatgatcgaggagctgcaggcgaagcgggccgacctcccgtatgaa
attgacggaatcgtcatcaaagtcgattcgctcgaccagcaggaagagctcgggtatacg
gcaaaaagcccgcgctgggcgattgcatataaattcccggcagaagaggtcgtgacaaaa
cttctcgatatcgaactgaatgtcggaagaacaggcgtcattacgccgaccgccgttctg
gaaccggtaaaagtcgcgggaacgacggtctcaagagcatcgcttcataacgaagattta
attaaagagaaggatatccgcattctcgataaagtggtcgttaaaaaagcgggcgacatt
atccctgaggtcgtcaatgtcttaattgaacagcggaccggagaagaaaaagaattcaat
atgccgaccgtctgccctgagtgcgaaagcgagcttgtgcgcattgaaggagaagtcgcg
ctgcgctgcatcaacccggaatgtccggcgcaaatcagagaaggcctgatccactttgtt
tcacgcaacgcgatgaatattgacggactcggagaacgtgtcatcacacagcttttccgt
gaacatctcgtccgtaatgtcgctgatttatataagctgacaaaagaacaggtcatccgg
cttgagcggatgggagaaaaatcaactgacaatctgatcagctccatccaaaaatcgaaa
gagaattcattggaacgcctgctgttcggtctcggcatccgttttatcggctcaaaagcg
gccaaaacactcgccatgcattttgaaagcctggaaaatctgaaacaagccacggaagaa
gagctgctggcagtagatgaaatcggtgaaaagatggccgatgccgtcatcacctatttc
cgaaaagaagaaatgcttgagcttttgaatgaactggaagagctcggtgtgaacacactc
tataaaggcccgaaaaaagtaaaagcggaggacagcgactcttattttgccggcaaaacc
atcgtgttaaccggaaagcttgaagagctgtccagaaatgaagccaaaacgcagattgaa
gcgctcggcggaaagctgacgggatctgtcagcaaaaaaacagacttgctgattgccgga
gaagcggccggaagcaagctgacaaaagcgcaggaattaaacattgaagtatgggatgaa
gcacagctattgggagagctaaagaaataa
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