Bartonella quintana Toulouse: BQ08760
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Entry
BQ08760 CDS
T00181
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bqu
Bartonella quintana Toulouse
Pathway
bqu03030
DNA replication
bqu03410
Base excision repair
bqu03420
Nucleotide excision repair
bqu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bqu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BQ08760 (ligA)
03410 Base excision repair
BQ08760 (ligA)
03420 Nucleotide excision repair
BQ08760 (ligA)
03430 Mismatch repair
BQ08760 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bqu03032
]
BQ08760 (ligA)
03400 DNA repair and recombination proteins [BR:
bqu03400
]
BQ08760 (ligA)
Enzymes [BR:
bqu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BQ08760 (ligA)
DNA replication proteins [BR:
bqu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BQ08760 (ligA)
DNA repair and recombination proteins [BR:
bqu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BQ08760 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BQ08760 (ligA)
MMR (mismatch excision repair)
DNA ligase
BQ08760 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BQ08760 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
DUF4796_N
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
CAF26355
UniProt:
Q6FZ81
LinkDB
All DBs
Position
complement(1029435..1031594)
Genome browser
AA seq
719 aa
AA seq
DB search
MNKDEIKNLTALEAESELEWLAKEIARHDVLYNRDDQPEISDAEYDALRRRNAEIEALFP
ELIRSDSPSHKIGAPVSEKFEKSVHAQAMLSLDNAFSSEDICEFIVRIRRFLRLPATQIL
EMTAEPKIDGLSLSLRYEKGRLVCAATRGDGYIGENVTANARTISDIPKVLRGEFPDIIE
VRGEVYMRRENFQALNMSQQEKGKFVFANPRNAAAGSLRQLDPRITASRKLHFFAYACGE
VSETFAASQMEMMKKLKEYGFFINPLTKSFKTLEEIISYYHDIEECRHSLSYDIDGIVYK
VNDLKLQMRLGFVSRSPRWAVAHKFPAEKAMALLEGIDIQVGRTGALTPVARLAPITIGG
VVVTNASLHNEDYIKGIGHKGESIREGRDIRVGDTVIVQRAGDVIPQIVDIIAEKRPKGA
SAFVFPHLCPACGSHAVREVGESVRRCTGGLICPAQAIERIRHFVSRNAFDIEGLGKKQV
EFFFHIQDEALCIHTPADIFTLQRRQEKALVRLENMEGFGTVSVRKLYNAINMRRKVPLS
RFLFALGIRHIGEVNARRLAHAYQNYTAFETVAMAATMPYDKVGEEGNEAWLELTNIEGI
GPQVGEAIIDFYQEAHNREVLAALLREVTPLDEENVMTASSPIAGKTIVFTGTLARMSRD
EAKALAERLGAKTSGSLSKKTDLLVAGSAVGSKLAKAQGLGVEVIDEEAWLQLIEGSYI
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaggatgaaattaaaaacttaactgctcttgaagcagaaagtgagctagagtgg
ttggcaaaagagattgcacgtcatgatgtactttataatcgtgatgaccaacctgaaatt
tctgatgcagagtatgatgctcttcgccggcgtaatgcagaaattgaagctctctttccc
gagcttattcgttcagattctccctcacataaaattggagcgccggtttctgaaaaattt
gaaaaatctgttcatgcccaggcaatgctttcacttgataatgcatttagctctgaagat
atctgtgaatttattgtacgtattcgtcgttttctacggcttccagcaacacaaatattg
gaaatgacagctgagccgaagatcgatggtttatctttgtctttgcgttatgaaaaagga
aggcttgtatgtgctgcaacgcgtggtgatggatatataggtgaaaatgtcactgcgaat
gcacgaacaatttctgatattccaaaagttttgcgaggtgaatttcctgatattattgag
gttcgcggtgaagtttatatgcgacgggagaatttccaagcccttaatatgagccaacaa
gaaaagggcaaattcgtttttgctaatcctagaaatgcagcagctggttctttacgtcag
cttgatccacggataactgccagcagaaagcttcatttttttgcttatgcatgtggtgaa
gtgagtgaaacatttgcagcaagccaaatggagatgatgaaaaagctaaaagaatatggc
ttttttatcaatccattaacaaaatcttttaagacactagaagagattatttcatattat
catgatattgaagaatgccgtcattccttaagttatgatattgatggaattgtttataaa
gttaatgatttgaagctacagatgcgtttggggtttgtttctcgttcaccacgttgggca
gttgcacataaatttccagcagaaaaagctatggcgcttttggaaggcattgatattcaa
gtcggtcgcacgggagcattaacccctgttgcacgccttgcacctattactataggtggt
gtggtggttaccaatgcaagtttgcataatgaggattatattaagggaattggtcataaa
ggtgagtccattcgtgaagggcgtgatattcgcgtaggggatacagtaattgttcaacgc
gctggtgatgtgattcctcaaattgttgatattattgctgaaaagcgtccaaagggcgcc
tctgcttttgtttttcctcatctgtgtcctgcttgtgggagtcatgctgtgcgtgaagtg
ggagaatctgtgcgtcgatgcactggtgggcttatttgtccagcacaagcgattgagcgt
attcgtcattttgtttcgcgcaatgcctttgatattgaaggacttggtaaaaaacaagtg
gaattcttttttcatattcaagatgaggcgctttgtattcatacacccgctgatattttt
actttacaacgtcgccaagaaaaagctctggtacgtctggaaaatatggaaggttttggt
actgtttcagttcgtaaactttataatgccattaatatgcgtcgaaaagttcctttaagc
cgttttttatttgcattgggaattcgccatattggggaagttaatgcacggcgtcttgca
catgcttaccagaattatacagcgtttgagactgtagcgatggcagctaccatgccatat
gataaggtcggtgaagaaggcaatgaagcttggttggagcttactaatatcgaagggatt
ggaccacaggtaggtgaagcaattattgatttttatcaagaagcgcataaccgcgaagtt
ttggctgctttgcttcgagaagtaacacctcttgatgaagaaaatgtcatgacagcttct
tcgccaatagcaggaaagaccatcgtttttacaggaactttggcgcgtatgtcacgcgat
gaagcaaaagcgctagctgaacggttaggtgcaaagacttctggttctctttctaaaaaa
accgatcttcttgttgcaggatctgcagtgggatcaaaattggctaaagcacaagggtta
ggtgttgaggttatcgatgaagaggcttggttgcaattgattgagggatcttatatttag
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