Bradyrhizobium sp. ORS 278: BRADO5649
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Entry
BRADO5649 CDS
T00516
Symbol
ligA
Name
(GenBank) DNA ligase (Polydeoxyribonucleotide synthase [NAD+])
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bra
Bradyrhizobium sp. ORS 278
Pathway
bra03030
DNA replication
bra03410
Base excision repair
bra03420
Nucleotide excision repair
bra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BRADO5649 (ligA)
03410 Base excision repair
BRADO5649 (ligA)
03420 Nucleotide excision repair
BRADO5649 (ligA)
03430 Mismatch repair
BRADO5649 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bra03032
]
BRADO5649 (ligA)
03400 DNA repair and recombination proteins [BR:
bra03400
]
BRADO5649 (ligA)
Enzymes [BR:
bra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BRADO5649 (ligA)
DNA replication proteins [BR:
bra03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BRADO5649 (ligA)
DNA repair and recombination proteins [BR:
bra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BRADO5649 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BRADO5649 (ligA)
MMR (mismatch excision repair)
DNA ligase
BRADO5649 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BRADO5649 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
CAL79319
UniProt:
A4YZJ3
LinkDB
All DBs
Position
complement(5837705..5839855)
Genome browser
AA seq
716 aa
AA seq
DB search
MAKTAKSKQSVDVADLTKAQAKVEWKRLALELETHDRLYYQEDAPKISDAAYDELRRRFN
AIEKRFPELVSRDSPSQTVGAAPSGRFKKVRHAVPMLSLDNAFAEEDVRDFVGRIARFLK
LAEDDRIAFSAEPKIDGLSMSLRYEGGQLVTAATRGDGAEGEDVTANIRTLKDVPQKLHG
RNLPDICEIRGEVYMTKQAFLALNERQKEAGDTIFANPRNSAAGSLRQKDPTITASRPLG
FFAYAWGDMSAMPAETQSGMIKWFEHCGFTTNPLTKLCHSVEELIAFHRAIEEQRAELDY
DIDGVVYKVDRIDWQERLGFVSRTPRWGIAHKFPAERAMTVLKDIEIQVGRTGSFTPVGK
LEPVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDVL
IDKRPADAEVFAFPRKCPCPLHTDVVREETAAGEEGSRARCTGEFACPYQKIEHLKLFAS
RRAFDIDGLGEKQIQFFFDEGWVKEPADIFTLQKRNAKLKLEEVEGYGETSVRNLFNAIE
ARREMALERFIYALGMRYVGETTALALARGYGSWEAFHDACLKVANGDEEAIAEMDALDQ
IGETVIKSVAAYFGEDHNRGIVERLTREVKILDAEKPKRNSPIATKTVVFTGTLEKMTRD
EAKATAERLGAKVSGSVSKKTDYVVAGPGAGSKLKDAEKHGVKVLTEDEWLQLIGE
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaacagcaaaatccaagcagtccgtcgacgtcgccgatctgaccaaggcccag
gccaaggtggagtggaagcggctggcgctggaactcgagacccacgataggctctactac
caggaggacgcgccgaagatttcggacgccgcctacgacgagctgcgtcgtcgcttcaac
gccatcgaaaagcgctttcccgaactcgtcagccgcgactcgccgtcccagacggtgggc
gccgcaccgtccggccggttcaagaaggtccggcatgcggtgccgatgctgtcgctcgat
aatgccttcgccgaagaggacgtgcgcgacttcgtcggccgcatcgcgcgcttcctgaag
cttgccgaggatgatcgcatcgctttctccgcagagccgaagatcgacgggctgtcgatg
tcgctgcgctacgagggcggccaactggtcacagcggcgacccgcggcgacggcgcggag
ggcgaggacgtcactgccaacatccgtaccttgaaggacgtgccgcagaagctgcatggc
cgcaaccttcccgacatctgcgagatccgcggcgaggtctacatgaccaagcaggcgttt
ctcgcgctcaacgagcgccagaaggaagccggggacacgattttcgcgaatccccgcaac
tccgccgcggggtcgttgcgccagaaggacccgaccatcacggcgtcgcggcccctcggc
ttcttcgcctatgcctggggcgacatgagcgcgatgcccgcggagacgcagagcggcatg
atcaaatggttcgagcattgtggcttcaccaccaacccgctgaccaagctctgccactcg
gtcgaggagctgattgcgttccaccgcgcgatcgaggagcagcgcgccgagctcgactat
gacatcgacggtgtcgtctacaaggtcgaccgcatcgactggcaggagcggctcggcttc
gtctcgcgcacgccgcgctggggcatcgcgcacaaattcccggccgagcgtgccatgacc
gtgctgaaggacatcgagatccaggtcggccgcaccggctcgttcacgccagtcggcaag
cttgagccggtcggcgtcggcggcgtcatcgtgcagaacgtcaccctgcacaatgaggac
tacatcaagggaatcggcaacaagggcgaggtcttgcgggaggggcgcgacatccgtatc
ggcgacaccgtcgtcatccagcgcgccggcgatgtcattcctcaggtggttgacgttctc
atcgacaagcggcctgccgatgccgaggtgtttgcctttcccagaaagtgtccctgcccg
ctacacaccgacgtcgtccgcgaggagactgcggccggcgaggagggctcgcgcgcccgc
tgcaccggcgagttcgcctgtccctatcagaagatcgagcacctcaagctgttcgcctcg
cgccgcgccttcgatatcgacggtctcggcgaaaagcagatccagttcttcttcgatgaa
ggctgggtgaaggagccggccgacatcttcaccctgcagaagcgcaacgccaagctgaag
ctggaggaggtcgagggctatggcgagacctccgtgcgcaatctcttcaacgccatcgag
gcgcggcgcgagatggcgctggagcggttcatctacgcgctcggcatgcgctatgtcggc
gagaccacggccctggcgctggcgcgcggctacggctcctgggaggcgttccacgacgcc
tgcctgaaggttgccaatggcgacgaggaggcgatcgccgagatggatgcgctcgaccag
atcggcgaaacagtgatcaagagcgtcgccgcctatttcggcgaagaccacaatcgcggc
atcgtcgagcggctgacccgcgaggtgaagatcctggatgccgagaagcccaagcgtaat
tcgccgatcgcgaccaagacggtggtgttcacgggcacgctggaaaagatgacgcgcgac
gaggccaaggccacagccgagcggctcggcgcgaaagtgtcgggatcggtatcaaagaag
acggactacgtcgtcgccggtcctggtgcgggctcgaagctgaaggatgccgagaagcac
ggcgtcaaggtgctgaccgaggacgagtggctgcagctgatcggggagtag
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