Bradyrhizobium sp. Ash2021: NL528_34930
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Entry
NL528_34930 CDS
T11004
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
braa Bradyrhizobium sp. Ash2021
Pathway
braa03030
DNA replication
braa03410
Base excision repair
braa03420
Nucleotide excision repair
braa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
braa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NL528_34930 (ligA)
03410 Base excision repair
NL528_34930 (ligA)
03420 Nucleotide excision repair
NL528_34930 (ligA)
03430 Mismatch repair
NL528_34930 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
braa03032
]
NL528_34930 (ligA)
03400 DNA repair and recombination proteins [BR:
braa03400
]
NL528_34930 (ligA)
Enzymes [BR:
braa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NL528_34930 (ligA)
DNA replication proteins [BR:
braa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NL528_34930 (ligA)
DNA repair and recombination proteins [BR:
braa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NL528_34930 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NL528_34930 (ligA)
MMR (mismatch excision repair)
DNA ligase
NL528_34930 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NL528_34930 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
DUF6058
Motif
Other DBs
NCBI-ProteinID:
WMT73126
LinkDB
All DBs
Position
complement(7269485..7271635)
Genome browser
AA seq
716 aa
AA seq
DB search
MAKTAKTRILTDVAKLTKAQAKVEHMRLALELEGHDKRYYQDDAPSVTDAEYDALRQRYN
AIEKRFPEFVTSDSPSQKVGAAPSGRFKKVRHAMPMLSLDNAFAEQDVLDFVGRIERFLK
LQDDKIDFSAEPKIDGLSMSLRYEGGELITAATRGDGAEGEDVTANIRTLEDVPQKLKGR
NVPGICEVRGEVYMTKKAFLALNKKQIEAGEAPFANPRNSAAGSLRQKDPTITASRPLGF
FAYAWGEMSEMPEDTQSGMIGWFQRCGFKTNPLTKLCHSTDQLIAFHRKIEEQRAELDYD
IDGVVYKIDRIDWQERLGFVSRTPRWAIAHKFPAERATTVLRDIEIQVGRTGSFTPVGKL
EPVGVGGVIVQNVTLHNEDYIKGIGGDGEQLRDGRDIRIGDTVVIQRAGDVIPQVVDVVI
DKRPKNAREFQFPKKCPCPLHTDVVREETATGEEGSRARCTGEFACPFQKIEHLRLFVSR
RAFDIDGLGEKQIQFFFDEGWVKEPADIFTLPKRNARLKLEEIEGYGETSVRNLFASIEG
RRRVSLERFIYALGMRHVGETTALALARGYGSWQAFHDAGLKVAKGEEETIAEMDALDQI
GDTVIRSVAAYFGESHNRGIVERLVKELDEIIDAEKPKSNSAVSGKTVVFSGSLERMTRD
EAKANAERLGAKAASSVSKKTDYLIAGPGAGSKLAEAKKHGVAVLTEDEWLKLIGE
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaacagcaaagacaagaatactcaccgacgtcgccaagctcaccaaggcccag
gccaaggtcgagcacatgcggctggcgctggagctggaaggtcacgacaaacgctactac
caggacgacgcgcccagcgtcaccgacgccgaatacgatgcgctgcgacagcgctacaac
gccatcgaaaagcgctttccggaattcgtcacctcggactcgccctcacaaaaggtcggc
gcggcaccctcggggcgtttcaagaaggtccgccacgcgatgccgatgctgtcgctggac
aacgccttcgccgaacaggacgtgctcgatttcgtcggccgcatcgaacggtttctcaag
ctgcaggacgacaagatcgatttttccgccgagccgaaaatcgacgggctgtcgatgtcg
ctgcgctacgagggcggcgagctcattaccgccgccacccgtggcgacggtgcggaaggc
gaggatgtcaccgccaatatccgcacgctcgaggacgtcccgcagaagctgaagggccgc
aatgtgcccggcatctgcgaggtccgcggcgaagtctacatgaccaagaaagcctttctc
gcgctcaacaagaagcagatcgaggccggagaagcgccattcgccaatccgcgcaactcg
gcggccggttcgctgcgtcagaaggatccgaccatcaccgcctcgcggccgctcgggttt
ttcgcctatgcctggggcgagatgagcgagatgccggaagacacccagtccggcatgatc
ggctggttccagcgctgcggcttcaagaccaacccgctgacaaaactctgtcactccacc
gatcagttgatcgcgttccaccgcaagatcgaggagcagcgcgccgaactcgattacgac
atcgacggcgtcgtttacaagatcgaccgaatcgactggcaggagcgcctcggcttcgtg
tcgcgcacgccgcgctgggcgattgcgcataaattcccggccgaacgcgccacgaccgtg
ctccgcgatatcgagatccaggtcgggcgcaccggctcgttcacgccggtcggcaaactg
gagccggtcggggtcggcggcgtcatcgtgcagaacgtcacgctgcacaatgaggactac
atcaagggcatcggcggcgacggcgagcagctgcgcgacggccgcgatatccggatcggc
gataccgtggtgatccagcgggccggcgacgtgattccgcaagtggtcgacgtcgtcatc
gacaagcggccgaagaacgccagagaattccaattcccgaaaaaatgcccgtgtccgctg
cacaccgacgtggtgcgcgaggagaccgcgacgggggaggagggctcgcgcgcccgctgc
accggcgagttcgcctgtccgttccagaagatcgagcatctcaggcttttcgtctcgcgc
cgcgccttcgacatcgatgggctcggcgagaagcagatccagtttttcttcgacgaagga
tgggtgaaggagcccgccgatatcttcacgctgcccaagcgcaacgccaggctgaagctg
gaggagattgaaggctacggcgagacgtccgtacgcaacctgtttgcttcgatcgagggg
cggcgcagggtttcgctcgaacgttttatctatgcgctcggcatgcgccatgtcggcgag
accaccgcgctcgcgctcgcgcgcggctacggttcctggcaggctttccacgacgccggg
ctgaaggtcgccaagggtgaggaggagaccatcgccgagatggatgcgctggaccagatc
ggcgacaccgtgatcaggagcgtcgccgcctattttggcgagagccataaccgcggcatc
gtcgagcggttggtcaaggagctcgatgaaatcattgatgccgaaaagcccaagagcaat
tcggccgtctccggcaagactgtggttttttcgggctcgctcgagaggatgacgcgcgat
gaggcaaaggccaatgcggagcgtctcggtgccaaggcggccagttcggtatcgaagaag
acggactatctcatcgcaggtcccggcgccggatccaaattggcggaggccaagaagcac
ggcgttgccgtgctgaccgaggacgagtggctgaagctgatcggggagtga
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integrated database retrieval system
