Bradyrhizobium sp. I71: FJV43_09360
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Entry
FJV43_09360 CDS
T11002
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
brai Bradyrhizobium sp. I71
Pathway
brai03030
DNA replication
brai03410
Base excision repair
brai03420
Nucleotide excision repair
brai03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
brai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FJV43_09360 (ligA)
03410 Base excision repair
FJV43_09360 (ligA)
03420 Nucleotide excision repair
FJV43_09360 (ligA)
03430 Mismatch repair
FJV43_09360 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
brai03032
]
FJV43_09360 (ligA)
03400 DNA repair and recombination proteins [BR:
brai03400
]
FJV43_09360 (ligA)
Enzymes [BR:
brai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FJV43_09360 (ligA)
DNA replication proteins [BR:
brai03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FJV43_09360 (ligA)
DNA repair and recombination proteins [BR:
brai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FJV43_09360 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FJV43_09360 (ligA)
MMR (mismatch excision repair)
DNA ligase
FJV43_09360 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FJV43_09360 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
ULK99916
LinkDB
All DBs
Position
complement(1881185..1883338)
Genome browser
AA seq
717 aa
AA seq
DB search
MARAARSKATPLRDVADLTKAQAKVEHMRLALEIEGHNERYYQEDAPTVTDAEYDALRQR
FNAIEKRFPEFVTADSPSQKVGAAPSGRFRKVRHAVPMLSLDNAFAEEDVRDFVGRIVRF
LKLDDDKVDFSAEPKIDGLSMSLRYEGGELVTAATRGDGAVGEDVTANIRTLEDVPQTLK
GRNVPDICEVRGEVYMTKKAFLALNERQKAEGGTIFANPRNSAAGSLRQKDPTITASRPL
GFFAYAWGQMSAMPEETQSGMIAWFERCGFKTNPLTRLCHSVEELLAFHHAIEEQRARLD
YDIDGVVYKVDRIDWQERLGFVSRTPRWGIAHKFPAERAMTVLRDIEIQVGRTGSFTPVG
KLEPVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDV
VLDKRPKSAREFHFPKKCPCPLHTDVVREETATGEEGSRARCTGEFACPYQKIEHLKLFV
SRRAFDIDGLGEKQLQYFFDEGWVKEPADIFTLEKRNAKLKLEEIEGYGTTSVRNLFSAI
ESRRRIALERFIYALGMRHVGETTALALARGYGSWEAFHDACLKVAKGEEEAIAEMDALD
QIGDTVIKSIADYFGESHNRGIVERLTKEVEIVDAEKPKSNSAVAGKTVVFTGSLEKMTR
DEAKATAERLGAKVSGSVSKKTDLVVAGPGAGSKLAEANKHGVKVLTEDEWLKLIGE
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggccagagcagcaagatccaaagcaacaccgcttcgcgacgtcgccgacctcaccaag
gcgcaggccaaggtcgagcacatgcggctcgcgctcgagatcgaggggcacaacgagcgc
tactatcaagaggacgcgcccaccgtcaccgatgccgagtacgacgcgctgcgccaacgc
ttcaacgcgatcgagaagcgctttcccgagttcgtcaccgcggactcgccctcgcagaag
gtcggcgcggcgccgtcgggccgcttcaggaaggtccggcatgccgttcccatgctgtcg
ctcgacaacgcctttgccgaggaggacgtgcgcgacttcgtcggccgcatcgtgcgattc
ctgaagctcgacgacgacaaggtcgatttctccgccgagccgaagatcgacgggctctcg
atgtcgctgcgctacgagggtggcgaactcgtcaccgccgcaacgcgcggcgacggcgcg
gtcggcgaggacgtcaccgccaacatccgcaccctcgaagacgtgccgcagacgctgaag
ggccgcaacgtccccgacatctgcgaggtgcgtggcgaggtctacatgaccaagaaggcc
ttcctggcgctcaacgaaaggcagaaggccgaaggcggcaccattttcgccaatccgcgc
aattcggccgcgggctcgctccggcagaaggacccgaccatcaccgcctcgcgcccgctc
ggcttcttcgcctacgcgtgggggcagatgagcgcgatgccggaagagacgcagagcggc
atgatcgcctggttcgagcgctgcggcttcaagaccaatccactgaccaggctctgtcac
tccgtcgaggaattgctcgccttccatcatgcgatcgaggagcagcgcgctcggctcgac
tacgacatcgacggtgtcgtctacaaggtcgatcgcatcgactggcaggagcggctcggc
ttcgtctcacgcacgccgcgctggggcatcgcgcacaaattcccggccgagcgcgccatg
acggtgctgcgcgacatcgagatccaggtcggccgcaccggctcgttcacgccggtcggc
aaactcgagccggtcggcgtcggcggggtgatcgtgcagaacgtcacactgcacaacgaa
gactacatcaagggcatcggcaacaagggcgaggtgctgcgcgagggccgtgacatcagg
atcggcgacaccgtcgtgatccagcgcgccggcgacgtcatcccgcaggtggtcgacgtc
gtcctcgacaagcggccgaagtccgccagggaattccacttcccgaagaagtgcccgtgt
ccgctccacaccgacgtcgtgcgcgaggagacggcgacgggcgaggagggctcgcgcgcc
cgctgcaccggcgaattcgcctgtccctatcagaagatcgagcatctcaagctgttcgtc
tcgcggcgcgccttcgacatcgacggcctcggcgagaagcagcttcagtatttcttcgac
gaggggtgggtgaaggagcccgccgacatcttcacgctggagaagcgcaacgcgaagctc
aagctcgaggagatcgagggctatggcacgacctcggtccgcaatctgttcagcgccatc
gagagccggcgcagaatcgcgctggaacgcttcatttatgcgctcggcatgcgccatgtc
ggcgagaccacggcgctggccctggctcgtggctacggctcgtgggaggccttccacgat
gcctgcctcaaggtcgccaagggcgaggaggaggcgatcgcggagatggacgcgctcgac
cagatcggcgacaccgtgatcaagagcatcgccgactatttcggcgagagccacaatcgc
ggcatcgtcgagcggctgaccaaggaggtcgagatcgtcgacgccgagaagccgaagagc
aattcggccgtcgccggcaagaccgtggtgttcacgggctcgctggagaagatgacgcgg
gatgaagccaaggccacggcagagcgtctgggggcaaaggtgtcgggctcggtgtcgaag
aagaccgatctcgtcgtcgccggccccggcgcgggctcgaagctcgcggaagccaacaag
cacggggtcaaggtgctgacggaagacgagtggctgaagctgatcggggagtga
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