Bradyrhizobium sp. 62B: ML401_26880
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Entry
ML401_26880 CDS
T10244
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bray Bradyrhizobium sp. 62B
Pathway
bray03030
DNA replication
bray03410
Base excision repair
bray03420
Nucleotide excision repair
bray03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bray00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ML401_26880 (ligA)
03410 Base excision repair
ML401_26880 (ligA)
03420 Nucleotide excision repair
ML401_26880 (ligA)
03430 Mismatch repair
ML401_26880 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bray03032
]
ML401_26880 (ligA)
03400 DNA repair and recombination proteins [BR:
bray03400
]
ML401_26880 (ligA)
Enzymes [BR:
bray01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ML401_26880 (ligA)
DNA replication proteins [BR:
bray03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ML401_26880 (ligA)
DNA repair and recombination proteins [BR:
bray03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ML401_26880 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ML401_26880 (ligA)
MMR (mismatch excision repair)
DNA ligase
ML401_26880 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ML401_26880 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
FokI_D1
Motif
Other DBs
NCBI-ProteinID:
WIW45053
LinkDB
All DBs
Position
complement(5828389..5830542)
Genome browser
AA seq
717 aa
AA seq
DB search
MARAAKSKAKPLRDVADLTKAQAKVEHMRLSLEIEGHNERYYQEDAPSVTDAEYDALRQR
FNAIEKRFPEFVTADSPSQKVGAAPSGRFKKVRHSVPMLSLDNAFAEEDVRDFVGRIVRF
LKLGDDEVNFSAEPKIDGLSMSLRYEGGELVTAATRGDGAVGEDVTANIRTLEDVPQKLK
GRNVPDICEVRGEVYMTKKAFLALNERQKAAGDTIFANPRNSAAGSLRQKDPTITASRPL
GFFAYAWGEMSAMPEETQTGMIHWFERCGFKTNPLTKLCHSVEELVAFHQSIEEERAELD
YDIDGVVYKVDRIDWQERLGFVSRTPRWGIAHKFPAERAMTVLRDIEIQVGRTGSFTPVG
KLEPVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQIVDV
VLDKRPKSAKEFSFPKKCPCPLHTDVVRGETAAGEEESRARCSGEFACPYQKIEHLKLFV
SRRAFDIDGLGEKQLQYFFDEGWVKEPADIFTLEKRNSKLKLEEIEGYGATSVRNLFAAI
ESRRKIALERFVYALGMRHVGETTALALARGYGSWDAFHDACLKVADGDEEAMADMDALD
QIGDTVIKSIADYFGESHNRGIVERLTKEVEIVDAEKPKSNSPVAGKTVVFTGSLQKMTR
DEAKATAERLGAKVSGSVSKKTDLVVAGPGAGSKLAEANKHGVKVLTEDEWLKLIGE
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggccagagcagcaaaatccaaagcaaaaccgcttcgtgacgtcgccgatctcaccaag
gcccaggccaaggtcgagcacatgcggctgtcgctcgagatcgaggggcacaacgagcgc
tactatcaagaggacgcgccctccgttaccgacgccgaatacgacgcgttgcgccagcgc
ttcaacgccatcgagaagcggtttccggaattcgtcacggcggactcgccctcgcagaag
gtcggcgcggcgccgtccggccgcttcaagaaggtccggcattccgttccgatgctgtcg
ctcgacaacgcctttgccgaagaggacgtgcgcgacttcgtcggccgcatcgtgcggttc
ctcaagctcggcgacgacgaggtcaatttctccgccgagccgaagatcgacggcctgtcg
atgtcgctgcgctacgagggcggcgagctcgtcaccgcggcgacacgcggcgacggcgcg
gtgggcgaggacgtcaccgccaacattcgtactctcgaagacgtgccgcagaagctgaag
gggcgcaacgtccccgacatctgcgaggtccgcggcgaggtctacatgaccaagaaggcg
ttcctcgcgctcaatgagcggcagaaggcggcgggcgataccatcttcgccaatccgcgc
aattcggccgcgggctcgctccggcagaaggacccgaccatcaccgcttcgcgtccgctc
ggcttcttcgcctatgcctggggcgagatgagcgcgatgccggaagagacgcagaccggc
atgatccattggttcgagcgctgtggcttcaagaccaatccgctgaccaagctctgtcac
tcggtcgaggagttggtcgcgttccaccagagcatcgaggaagagcgcgccgagctcgac
tacgatatcgacggtgtcgtctacaaggtcgaccgcatcgactggcaggagcgtcttggc
ttcgtctcgcgcacgccgcgctggggcatcgcgcacaaattcccggcggagcgcgccatg
acggtgctgcgcgacatcgagatccaggtcggccgcaccggctcgttcacgccggtcggc
aagctcgaaccggtcggtgtcggcggcgtgatcgtacagaacgtcacgctgcacaacgag
gactacatcaagggtatcggcaacaagggcgaagtgctgcgcgagggtcgcgatatcagg
atcggtgacaccgtcgtgatccagcgcgccggcgacgtcattccgcagatcgtcgacgtc
gtgctcgacaagcggccgaagagtgccaaggagttttccttcccgaagaaatgcccgtgc
ccgctgcacaccgacgtcgtgcgcggagagacggccgccggcgaagaggaatcccgcgcc
cggtgcagcggcgagttcgcctgtccctatcagaagatcgagcacttgaagctgttcgtc
tcgcgccgtgccttcgatatcgacggtctgggcgaaaagcagctgcagtatttcttcgat
gaaggctgggtcaaggagcccgccgacatcttcacgctggagaagcgcaattccaagctc
aagctcgaggagatcgagggctacggcgcgacttcggtacgcaatctgttcgcagccatc
gagagccggcgcaagatcgcgctggagcgcttcgtctatgcgctcggcatgcgccatgtc
ggtgagaccaccgcgctggcgctggcgcgcggctacggctcctgggatgccttccacgac
gcctgcctgaaggtcgccgacggcgacgaggaggcgatggccgacatggacgcgctggac
cagatcggcgacaccgtgatcaagagcatcgccgattatttcggcgaaagccacaatcgc
ggcatcgtcgaacggctgaccaaggaggtcgagatcgtcgacgccgagaaaccgaagagc
aattcgcccgtcgccggcaagaccgtggtgttcacgggatcgctgcagaagatgacccgc
gacgaggccaaggccaccgccgagcggctaggcgcaaaggtgtcgggctcggtgtcgaag
aagaccgatctcgtcgtcgccggccccggcgcgggctcgaagctcgcggaggccaacaag
cacggcgtcaaggtgctgaccgaggacgagtggctgaagctgatcggggagtga
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