Bradyrhizobium sp. C-145: LRP30_35100
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Entry
LRP30_35100 CDS
T09672
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
braz
Bradyrhizobium sp. C-145
Pathway
braz03030
DNA replication
braz03410
Base excision repair
braz03420
Nucleotide excision repair
braz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
braz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LRP30_35100 (ligA)
03410 Base excision repair
LRP30_35100 (ligA)
03420 Nucleotide excision repair
LRP30_35100 (ligA)
03430 Mismatch repair
LRP30_35100 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
braz03032
]
LRP30_35100 (ligA)
03400 DNA repair and recombination proteins [BR:
braz03400
]
LRP30_35100 (ligA)
Enzymes [BR:
braz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LRP30_35100 (ligA)
DNA replication proteins [BR:
braz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LRP30_35100 (ligA)
DNA repair and recombination proteins [BR:
braz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LRP30_35100 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LRP30_35100 (ligA)
MMR (mismatch excision repair)
DNA ligase
LRP30_35100 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LRP30_35100 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Bep_C_terminal
Motif
Other DBs
NCBI-ProteinID:
UQR61974
LinkDB
All DBs
Position
complement(7468775..7470928)
Genome browser
AA seq
717 aa
AA seq
DB search
MARAAKSKATPPRDVADLTQAQAKVEHKRLALEIEGHNERYYQEDAPTITDAEYDALRQR
LNAIEKRFPEFVSAESPSQKVGAAPSGRFRKVRHALPMLSLDNAFAEEDVRDFVGRIARF
LKLGDDQVNFSAEPKIDGLSMSLRYEGGELITAATRGDGAVGEDVTANIRTLEDVPQKLK
GRNVPDICEVRGEVYMTKKAFLALNERQKAAGDTIFANPRNSAAGSLRQKDPTITASRPL
GFFAYAWGEMSAMPEGTQSGMIGWFERCGFKTNPLTKLCHSIEELLAFHHSIEEQRARLD
YDIDGVVYKVDRIDWQERLGFVSRTPRWGIAHKFPAERAMTVLRDIEIQVGRTGSFTPVG
KLEPVGVGGVIVQNVSLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDV
VLDKRPKTAKEFHFPKKCPCPLHTDVTREETATGEEGSRARCTGEFACPYQKIEHLKLFV
SRRAFDIDGLGEKQLQYFFDEGWVKEPADIFTLEERNSKLKLEQIEGYGATSVRNLFGAI
ESRRKIALERFVYALGMRHVGETTALALARGYGSWDAFHDACLKVAKGDEEAMADMDALD
QIGDTVIKSIADYFGESHNRGIVERLTKEVEIVDAEKPKSNSAVAGKTVVFTGSLEKMTR
DEAKATAERLGAKVSGSVSKKTDLVVAGPGAGSKLAEANKHGVKVLTEDEWLKLIGE
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggccagagcagcaaaatccaaagcaacaccgcctcgcgacgtcgccgacctcactcag
gcgcaggccaaggttgagcacaagcggctggcgctcgagatcgaggggcacaacgagcgc
tactatcaagaggacgcgcccaccatcaccgacgccgaatatgatgcgttgcggcagcgc
ctcaacgccatcgaaaagcgctttccggagttcgtcagcgcggagtcgccgtcgcagaag
gtcggcgcggcgccgtcgggccgcttcaggaaggtccggcacgccctcccgatgctgtcg
ctcgacaacgcctttgccgaagaggacgtgcgcgacttcgtcggccgcatcgcgcgcttc
ctgaagctcggcgacgatcaggtcaatttctccgccgaacccaagatcgacggcctgtcg
atgtcgctgcgctatgagggcggtgaactcatcacggccgcgacgcgcggcgacggcgcg
gtgggcgaggatgtcaccgccaacatccgcacgctcgaagacgtgccgcagaagctgaag
ggccgcaacgtccccgatatctgcgaggtgcgcggcgaggtctacatgaccaagaaggcc
ttcctggcgctcaatgagcggcagaaggccgccggcgacaccatcttcgccaatccgcgc
aactcggccgcaggctctttgcggcagaaggatccgaccatcaccgcctcgcgcccgctc
ggtttcttcgcctatgcctggggcgagatgagcgcgatgcccgagggcacgcagagcggc
atgatcggctggttcgagcgttgcggcttcaagaccaatccgctgaccaagctgtgtcac
tcgatcgaggagctgctcgcgttccatcactcgatcgaagagcagcgcgcaagactcgac
tacgacatcgacggcgtcgtctacaaggtcgaccggatcgactggcaggagcggctcggc
ttcgtctcgcgcacgccgcgctggggcatcgcgcacaaattcccggccgaacgtgccatg
acggtgctgcgcgacatcgaaatccaggtcggccgcaccggctcgttcacgccggtcggc
aagctcgaaccggtcggcgtcggaggggtgatcgtgcagaacgtctcgctgcacaatgag
gactacatcaagggcatcggcaacaagggcgaggtgctgcgcgagggccgcgacatccgc
atcggcgacacggtggtgattcagcgcgccggcgacgtcatcccgcaggtggtcgacgtc
gtcctcgacaagcggccgaagaccgccaaggaatttcactttccgaagaagtgcccgtgt
ccgctgcacaccgacgtcacgcgtgaggagacggcgaccggcgaagagggctcgcgcgcc
cgctgcaccggcgaattcgcctgcccctatcagaagatcgagcatctcaagctgttcgtc
tcgcgccgcgccttcgacatcgacggattgggggagaagcagctccagtatttcttcgat
gagggatgggtgaaggagcctgccgacatcttcacgctggaggagcgcaactcaaaactc
aagctcgaacagatcgagggctacggcgcaacgtcggtgcgaaatctcttcggcgccatc
gagagccggcggaaaatcgcgctggagcgcttcgtctatgcgctcggcatgcgccatgtc
ggcgagaccacggcgctggccctcgcacgcggctacggctcctgggatgcctttcacgat
gcctgcctcaaggtcgccaagggcgacgaggaggccatggcggacatggacgcgctcgac
caaatcggcgacaccgtcatcaagagcatcgccgactatttcggcgagagccacaatcgc
ggcatcgtcgagcggttgaccaaggaagtcgagatcgtcgacgccgagaagccgaagagc
aattcggccgtcgccggcaagaccgtggtgttcaccggctcgctggagaagatgacgcgg
gacgaggccaaggcaaccgcggagcggctgggtgcaaaggtgtcgggatcggtgtcgaag
aagaccgatctcgtcgtggccggccccggcgccggctcgaaactcgccgaagccaacaag
cacggcgtgaaggtactgaccgaggacgagtggctgaagctgattggggagtga
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