Brenneria rubrifaciens: EH207_13610
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Entry
EH207_13610 CDS
T05976
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
brb
Brenneria rubrifaciens
Pathway
brb03030
DNA replication
brb03410
Base excision repair
brb03420
Nucleotide excision repair
brb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
brb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EH207_13610 (ligA)
03410 Base excision repair
EH207_13610 (ligA)
03420 Nucleotide excision repair
EH207_13610 (ligA)
03430 Mismatch repair
EH207_13610 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
brb03032
]
EH207_13610 (ligA)
03400 DNA repair and recombination proteins [BR:
brb03400
]
EH207_13610 (ligA)
Enzymes [BR:
brb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EH207_13610 (ligA)
DNA replication proteins [BR:
brb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EH207_13610 (ligA)
DNA repair and recombination proteins [BR:
brb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EH207_13610 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EH207_13610 (ligA)
MMR (mismatch excision repair)
DNA ligase
EH207_13610 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EH207_13610 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
5_3_exonuc
HHH
Motif
Other DBs
NCBI-ProteinID:
QCR09461
UniProt:
A0A4P8QQQ5
LinkDB
All DBs
Position
complement(2988739..2990793)
Genome browser
AA seq
684 aa
AA seq
DB search
MKPLNPESAEVREATLRIAALRTTLRHHEYQYHVEDAPEIPDAEYDRLMQELKDLEAAHP
QLVTTDSPTQRVGAAPLAAFEQVRHEVPMLSLDNVFDEDSYLAFSKRIGDRLKNADDLTF
CCELKLDGLAVSLLYEEGVLVRAATRGDGATGENITSNIRTIGAIPLCLKGEHIPRRLEV
RGEVFMKHRGFERLNDEARRTGGKVFANPRNAAAGSLRQLDPRITARRPLTFYCYGVGLL
EGGELPASHWERLMQFKQWGLPVSDHTRRCTGSAEVLDFYHQVEHNRRSLGFDIDGVVVK
VDDLALQTRLGFVAKAPRWAVAFKFPAQEQLTWIRDVEFQVGRTGAITPVARLEPVAVAG
VMVSNATLHNADEIERLGLRIGDRVIVRRAGDVIPQIVGVVESERPEEARPIVFPGHCPV
CHSDVERVDGEVVTRCTGGLICGAQRKEALKHFVSRRALDVEGMGDKIIDQLVEKQYVET
PADLFRLTAGILTGLDRMGPKSAQNLVNALQKAKSTTLARFLFALGIRDVGETTAANLAA
HFGSLDTLFAADEEALLEVADVGKVVAAHVRHFLDEAHNQKVIRELTDPEGINVHWPAPV
MIKAEEIDSPFAGKTVVLTGSLRLLSRDEAKDRLTARGAKVSGSVSKKTDMVIAGEAAGS
KLAKAQELEIPVIDEAEMVRLLGE
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccattgaatccagaatcagccgaagtacgtgaggctacgttacgcatcgcagca
ctgcgaaccacgttgcgtcatcatgaataccaatatcacgttgaagatgcgcctgaaatt
cctgatgcggaatatgatcgtctcatgcaggaactgaaagatttggaagcggcacaccct
cagttggtgacgaccgactcaccgactcagcgcgtaggggccgcgccgctggccgctttc
gagcaggtgcggcatgaagtgccgatgctctcgctggataacgtctttgatgaagatagc
tacctggcgttcagcaagcgtatcggcgatcgactgaagaatgccgatgatttgacgttc
tgctgtgagctgaagctggacggtcttgccgtcagcctgctgtacgaagaaggcgttctg
gttcgcgccgcgacgcgcggagatggcgccaccggcgaaaatatcaccagcaacatccgt
accatcggcgcaataccgctttgccttaaaggtgagcacatcccgcggcggctggaagtt
cgcggggaagtgttcatgaagcatcgcggtttcgaaaggctgaatgatgaagcgcggcgt
accggcggcaaagtgttcgccaacccgcgtaatgcggcggcaggttcgctgcgtcagctc
gatccccggattacggccagacgtccgctgactttctactgctatggcgtcggtttgctg
gaaggcggcgaattgcccgccagccattgggaacggctgatgcagtttaaacagtgggga
ctcccggtcagcgatcatacccgtcgttgtacgggtagcgcagaagttcttgatttttat
catcaagttgaacataaccgccgttcgttggggtttgacattgatggcgtggttgtcaag
gttgacgatttggcgttgcagacgcgtcttggatttgtcgcgaaagcgcctcgctgggcc
gtggccttcaaatttccggcccaggagcaactgacctggattcgtgatgtcgagttccag
gtcgggcgtaccggggcgattacgcccgttgcccgccttgaaccggtcgcggtagccggg
gtgatggtcagcaatgcgacgctgcataatgcggatgaaatcgaacgcctcggattgcgg
attggcgatcgggttatcgtccggcgcgcgggtgatgttattccgcagatcgtgggggtg
gtggagtctgaacggccagaggaggcccggccgatagtcttccctgggcattgcccggtg
tgtcattccgacgtggagcgcgttgacggcgaagtggtgacccgttgcaccggcggtctg
atttgcggcgcgcagcggaaagaggcgttgaagcattttgtttcacgcagggcgctggat
gtggagggcatgggcgataaaatcatcgatcaactggtggaaaaacagtacgtcgaaacg
ccggccgatctgttccggctcacggcggggatcttgaccggcctcgatcgcatgggaccc
aagtctgcacagaatttggttaacgcgttgcagaaagcgaaaagcacgacgctggcgcgc
ttcctgttcgcgttggggattcgtgatgttggtgaaaccacggcagcgaatctggccgca
cactttggctcgctcgatacgctatttgccgcggacgaagaagcgttgcttgaagtggct
gacgtggggaaagtggtcgccgcccatgtgcgtcattttcttgatgaagcgcacaatcag
aaagtgatccgcgagttaaccgatcccgaggggatcaatgttcactggccggcgccggtg
atgatcaaggccgaagagatcgacagcccgttcgcgggaaaaaccgtggtgctgactggc
tcgttgcgtctcttgtcccgtgatgaagccaaggatcgtctgacggcgcggggtgcgaaa
gtcagtggcagcgtctcgaaaaaaaccgatatggtgattgccggggaagcggcgggatcg
aaactggccaaagcgcaggaactggagatcccggttattgatgaggccgaaatggtgcgt
ttattgggggagtaa
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integrated database retrieval system
