Brevundimonas sp. AJA228-03: HZ989_07115
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Entry
HZ989_07115 CDS
T09566
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
brea
Brevundimonas sp. AJA228-03
Pathway
brea03030
DNA replication
brea03410
Base excision repair
brea03420
Nucleotide excision repair
brea03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
brea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HZ989_07115 (ligA)
03410 Base excision repair
HZ989_07115 (ligA)
03420 Nucleotide excision repair
HZ989_07115 (ligA)
03430 Mismatch repair
HZ989_07115 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
brea03032
]
HZ989_07115 (ligA)
03400 DNA repair and recombination proteins [BR:
brea03400
]
HZ989_07115 (ligA)
Enzymes [BR:
brea01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HZ989_07115 (ligA)
DNA replication proteins [BR:
brea03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HZ989_07115 (ligA)
DNA repair and recombination proteins [BR:
brea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HZ989_07115 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HZ989_07115 (ligA)
MMR (mismatch excision repair)
DNA ligase
HZ989_07115 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HZ989_07115 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QTN20805
LinkDB
All DBs
Position
complement(1433126..1435441)
Genome browser
AA seq
771 aa
AA seq
DB search
MALTPIDSLTEAEAEAELARLAAEMAAHDAAYAEAAPTISDADYDALKARNLAIETRFPA
LVRPDSPSLRVGAPVSTRFAEVRHGVPMLSLDNAFDDADVGDFVARIRRFLNLPGDDDVA
FTAEPKIDGLSANLRYEDGVLVQGATRGDGRAGEDITANLKTLADVPHRLKGSGWPARIE
VRGEVYAPNDAFAAFNAEAEVAGRRTYANPRNFAAGSLRQIDPTVTAARPLRFFAYAWGE
TSEPFAQTQEEALTAFERWGFPVNPRSVRVEGAIGLIGVYRGLEADRAGLGYDIDGVVYK
VDRLDWQSRLGFVSRSPRWAIAHKFPAQQATTVLEGIDIQVGRTGSLTPVARLAPVTVGG
VVVRNATLHNEDEIARKDVRIGDTVVLQRAGDVIPQIVSVVLDRRPDDALPYVFPSHCPV
CGSEAVREGDDVRRRCTGGLICSAQLIERLKHFVSRRAFDIEGLGEKQLIAFHERGWIRE
PADIFRLARDAEKLERLRAEDGYGETSVRNLIAGIDARRVIALERLIFALGIRDIGDQTS
LLLARHFGDWAGFHAAAMEAASGIPSPGWSQLAEGHGISARTLSVMANAALSPVDPWPEA
PIEQKLALAFPGIAAPARRALVPLAGDWSDIVALARVAREEGPSVTLGEIAGIAGVGPVA
ARAVADFFHEPHNQAVVAALLAELSSVQDAERPKSDTAVTGKIVVFTGALERFTRDEAKA
RAESLGAKVSGSVSKKTDYLVAGPGAGSKLAEAQKHGVTVLTEDEWLALIG
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atggccctgacccccatcgactccctgaccgaagccgaggccgaagccgagctggcccgg
ctcgccgcagagatggcggcccacgacgccgcctatgccgaagcggccccgacgatctcc
gatgccgactacgacgcgctgaaagcccgcaacctggccatcgagacacggttcccggcc
ctggtccgcccggattcgccgtcgctcagggtgggggcccccgtctcgacgcggttcgcc
gaggttcgccacggcgtgcccatgctgtcgctggacaacgccttcgacgacgccgacgta
ggcgacttcgtcgcccgcatccggcgcttcctgaaccttccgggcgacgacgacgtcgct
ttcaccgccgagcccaagattgacggcctttcagccaacctgcgctatgaagacggcgtt
ctggtccagggcgcgacgcggggcgacggccgggcgggcgaggacatcaccgccaacctc
aagaccctcgccgacgttccgcatcgtctgaagggcagcggctggcccgctcgcatcgag
gtgcgcggcgaggtctatgcccccaacgacgccttcgccgccttcaacgcggaggccgag
gtcgccggtcgccgcacctatgccaacccccgcaacttcgccgccgggtcactgcgccag
atcgatccgacggtcaccgccgcccggcccctgcgcttcttcgcctatgcctggggcgag
acgtccgaaccgtttgcgcagacgcaggaagaggcgctgacggcgttcgaacgctggggc
tttccggtcaatccgcgctcggtccgggtcgaaggcgcaatcggcctgatcggagtctat
cgcgggctggaggccgaccgcgcgggcctcggctatgacatcgacggcgtggtctacaag
gtcgatcggctggactggcagtcccgccttggcttcgtctcgcgcagcccccgctgggcc
atcgcccacaaattcccggcccagcaggcgacgaccgtgctggagggcatcgacatccag
gtcggtcgaaccggctccctgacccccgtcgcccgcctcgcccccgtgaccgtcggcggc
gtcgtcgtcaggaacgccaccctgcacaacgaggacgagatcgcgcgcaaggacgtgcgg
atcggcgacaccgtcgtcctgcaacgcgccggggacgtcatcccccagatcgtctcggtc
gtgctcgacagacgccccgacgacgccctcccctatgtcttcccctcccactgcccggtg
tgtggctcggaggcggtgcgcgagggcgacgacgtgcgccgccgctgcaccggcggcctg
atctgcagcgcccagctgatcgaacgcctgaagcatttcgtctcccgccgcgccttcgac
atcgagggtctgggggaaaagcagctgatcgcctttcacgagcgcggctggatcagggag
cccgccgacatcttccgcctcgcccgcgacgcggaaaagctggagcgtctgcgcgccgag
gacgggtatggcgagaccagcgtcaggaatctgatcgcgggcattgacgcccgtcgcgtc
atcgccctggagcggctgatcttcgccctgggcatccgcgacatcggcgaccagacctcc
ctgctgctggcgcgccacttcggggactgggcgggcttccatgccgcggcgatggaggcg
gcatcgggcatcccctcgcccgggtggagccagctggccgagggacatggcatctccgcc
cgcaccctgtcggtcatggcgaacgccgcgctgtcgcccgtcgatccctggcccgaggcc
ccgatcgagcagaagctggccctggccttccccggcatcgccgcgcccgcccgccgcgcc
ctcgtcccgctggccggcgactggtccgatatcgtcgccctggcccgcgtcgcgcgcgag
gaggggccgtcggtgacgctgggcgagatcgccggcatcgcaggcgtcggccccgtcgcc
gcccgcgcggtcgccgacttcttccacgagccacacaaccaggcggtcgtcgcggccctg
ctggccgagctgtcctccgtccaggacgccgaacgccccaaatccgacaccgccgtcacc
ggcaagatcgtcgtcttcaccggcgcgctcgaacgcttcacccgtgacgaggccaaggcg
cgggccgagagcctcggggccaaggtctcaggctccgtgtcgaaaaagaccgactacctc
gtcgccgggcccggtgcgggctcgaagctggccgaggcgcagaagcacggcgtgaccgtc
ctgaccgaggacgaatggctggccttgatcggctag
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