Brevibacterium sp. BDJS002: PGC08_13595
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Entry
PGC08_13595 CDS
T10203
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
breb Brevibacterium sp. BDJS002
Pathway
breb03030
DNA replication
breb03410
Base excision repair
breb03420
Nucleotide excision repair
breb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
breb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PGC08_13595 (ligA)
03410 Base excision repair
PGC08_13595 (ligA)
03420 Nucleotide excision repair
PGC08_13595 (ligA)
03430 Mismatch repair
PGC08_13595 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
breb03032
]
PGC08_13595 (ligA)
03400 DNA repair and recombination proteins [BR:
breb03400
]
PGC08_13595 (ligA)
Enzymes [BR:
breb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PGC08_13595 (ligA)
DNA replication proteins [BR:
breb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PGC08_13595 (ligA)
DNA repair and recombination proteins [BR:
breb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PGC08_13595 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PGC08_13595 (ligA)
MMR (mismatch excision repair)
DNA ligase
PGC08_13595 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PGC08_13595 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
HHH_8
DNA_pol_lambd_f
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WCE39031
LinkDB
All DBs
Position
complement(2936693..2938882)
Genome browser
AA seq
729 aa
AA seq
DB search
MTATPDNSGESDTSDLSDATARAQAHADLVEKIEEQRAAYYKDDSPLVADAEYDDLVHRL
EDLEEKFPELVTDSSPTQTVGGNVDTSTFDPVEHIGRMYSLDNVFDFEELRGWYDRVRAA
TSAKSKFLCELKIDGLAVNLLYRNGELVRAATRGDGRIGEDITANVRTISDIPDKLDTDY
PPAEVEIRGEVFFPLEKFTELNAALVAEGKAPFANPRNSAAGSLRQKDPAVTAVRPLHML
VHGIAVWTPADGSHPEPAHQSEVYEQFRTWGLPISEYFKVLDNVDEIEDFITYYGEHRHD
VTHEIDGIVIKIDDIAVQETLGYTSRAPRWATAFKYPPEEVTTKLLDIQVQVGRTGRVTP
FAVMEPVTVAGSTVERATLHNGYEVTRKGVLIGDTVTLRKAGDVIPEVLGPVVAQRDGSE
YEFVMPTHCPSCGTKLGEQKAGDKDKRCPNARSCPAQLANRIFYLASRAAFDIEALGEEA
ALALTAPAEPESPPLTSEAFLFDLTAEDLAEVKIWRNKKVKGVETGERELVPYFYTRPTA
KKPSAPSANTKKLFDELDKAKDQDLWRVLVALSIRHVGPTAARTLAAHFRTLEAIRAAEL
EELSAVDGIGSTIAASIRDWFAVDWHVEIVEAWAEAGVRMEDEEQETGEQTLEGLTIVAT
GSLSTFTRDGIKEAILGAGGKAASSVSKKTDYVVAGENAGSKLEKAESLGVRVLDEDTFR
ILLETGSIE
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaacgcccgacaactccggcgagtccgatacgtctgacctctcagacgccacg
gcccgtgcccaagctcatgcagacctcgtggagaagatcgaagagcagcgcgccgcctac
tacaaggacgactcgcctctggtcgccgacgccgaatacgacgatctcgtccaccgcctc
gaagatctcgaagagaaattccccgaactcgtcaccgactcctcaccgacccagaccgtc
ggcggcaatgtcgacacctccaccttcgatccggtcgaacacatcgggcggatgtacagc
ctcgacaacgtcttcgacttcgaggagctgcggggatggtacgaccgggtccgggcggcc
acctcggcgaagtcgaagttcctctgcgaactcaagatcgatggactcgccgtcaacctg
ctctaccgcaacggtgaactcgtgcgcgccgccacccgcggcgacggccgcatcggcgag
gacatcaccgccaatgtccgcaccatctccgatatccccgacaagctcgacaccgactac
ccgccggccgaagtcgagatccgcggtgaggtgttcttcccgctggagaagttcaccgaa
ctcaacgccgccctcgtcgcagagggcaaggccccgtttgccaacccccgcaactcggcc
gccggatccctgcgccagaaggaccccgccgtcaccgctgtgcgacccctgcacatgctc
gtccacggcatcgcggtgtggacaccggccgatggctcccatcccgaaccggcccatcag
tccgaggtctatgagcagttccggacctggggcctgcccatcagcgaatacttcaaggtg
ctggataacgtcgatgagatcgaagacttcatcacctactacggggaacaccgccacgac
gtaacccatgagatcgacggcatcgtcatcaagatcgacgacatcgccgtccaagagacc
ctgggctatacctcacgtgcgccgaggtgggccacggccttcaaatacccgcccgaagag
gtcaccacgaagctcctcgatatccaggtccaggtgggcaggaccggtcgagtcaccccg
ttcgcggtgatggaaccggtcacggtcgccgggtccacggtggaacgagcgaccctgcac
aacggctacgaggtcacccgcaaaggtgtgctcatcggtgacacggtcaccctgcgcaag
gcaggtgacgtcattcccgaggtgctgggcccggtggtcgctcagcgtgatggcagcgaa
tacgaattcgtcatgcccacacactgcccctcctgcggaacgaagctgggggagcagaag
gcaggggacaaggacaagcgctgcccgaatgcccggtcctgtcccgcgcagctggccaac
cgcatcttctacctggcctcccgcgccgctttcgacatcgaagccctgggcgaagaggcg
gcgctggctttgaccgcaccggctgagcccgagtcaccgccgctgacctcggaggcgttc
ctcttcgacctcacggccgaggacttagccgaggtgaagatctggcggaacaagaaggtc
aagggcgtggagaccggggaacgcgagctggtgccctacttctacacgcgccccacagcg
aagaagcccagcgccccgagcgcgaatacgaagaagctcttcgacgaactcgacaaggcc
aaggaccaggacctgtggcgagtcctcgtcgcgctctcgatcaggcacgtgggaccgact
gctgcacgaaccctggccgcacacttccgcacccttgaggcgatccgggcggccgaactc
gaggaactctcggccgtcgacggcattggttcgacgatcgcagcgagcatccgcgactgg
ttcgccgtcgattggcatgtcgaaatcgtcgaggcctgggccgaagccggtgtgcggatg
gaagatgaggagcaggaaaccggagagcagaccttggagggcctgacgatcgtggccacc
ggttcgctgagcacattcacccgggacgggatcaaggaagcgatcctcggcgccggcggc
aaggcggcaagctccgtgtcgaagaagaccgactacgtggtggccggtgaaaacgccgga
tcgaagttggagaaggccgaatctttgggagtcagagtcctcgacgaagacaccttccgc
atactcctggagaccggaagcatcgagtga
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integrated database retrieval system
