Brevibacterium sp. JSBI002: LJ362_11730
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Entry
LJ362_11730 CDS
T10795
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
brej Brevibacterium sp. JSBI002
Pathway
brej03030
DNA replication
brej03410
Base excision repair
brej03420
Nucleotide excision repair
brej03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
brej00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LJ362_11730 (ligA)
03410 Base excision repair
LJ362_11730 (ligA)
03420 Nucleotide excision repair
LJ362_11730 (ligA)
03430 Mismatch repair
LJ362_11730 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
brej03032
]
LJ362_11730 (ligA)
03400 DNA repair and recombination proteins [BR:
brej03400
]
LJ362_11730 (ligA)
Enzymes [BR:
brej01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LJ362_11730 (ligA)
DNA replication proteins [BR:
brej03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LJ362_11730 (ligA)
DNA repair and recombination proteins [BR:
brej03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LJ362_11730 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LJ362_11730 (ligA)
MMR (mismatch excision repair)
DNA ligase
LJ362_11730 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LJ362_11730 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
DNA_pol_lambd_f
Nlig-Ia
BRCT_2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
UZD61350
LinkDB
All DBs
Position
complement(2576960..2579188)
Genome browser
AA seq
742 aa
AA seq
DB search
MTTTPENADSSTPEHQTSDSTTPELQGLDLTDATARAQAHAQLTERIEELRAAYYQDSLL
VSDAEYDELVHSLEDLEAQFPELVTDSSPTQTVGGVVDTSTFDPVEHIGPMYSLDNVFDY
EELRAWYERVRSATSVKSKFLCELKIDGLAVNLLYRNGELVRAATRGDGRIGEDITANVR
TISDIPHRLDTEHPPAEVEIRGEVFFPVEDFAELNASLVAEGKAPFANPRNSAAGSLRQK
DPAVTARRPLHMLVHGIAVWTPADDSHPEPAHQSEVYEQFRSWGLPISDYFKVLDTVDEI
EDFISYYGEHRHDVTHEIDGIVIKIDDIAVQETLGYTSRAPRWATAFKYPPEEVTTKLID
IQVQVGRTGRVTPFAVMEPVTVAGSTVERATLHNGYEVKRKGVLIGDTVTLRKAGDVIPE
VLGPVAALRDGSEHEFVMPTHCPSCGTELGEQREGDKDLRCPNSRSCPAQLANRIFYLAS
RAAFDIEALGEEAALALTAPAEPDTPPLTSEAFLFDLTPEDLAEVKIWRNKKSKGVETGE
RELVPYFYTRGTAKKPSAPSANTKKLFDELEKAKDQDLWRVLVALSIRHVGPTAARTLAA
KFRTLEAIREASLEELSAVESIGPTIAQSIRDWFEIDWHVEIVETWAAAGVRMEDDEVEA
AEQTLEGLTIVATGSLSSFTRDGIKEAILGAGGKAAGSVSKKTDYVVAGENAGSKLEKAE
SLGVPVLDEDQFRVLLETGRLD
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgacaccggagaacgccgactcatcgacgcccgagcaccagacctcggattcg
accacacccgagctgcagggcctcgacctcaccgacgcgaccgctcgcgctcaggcccat
gcccagctgacggagaggatcgaggagctgcgggccgcctactatcaggactccctgctc
gtctccgatgccgagtacgacgagctcgtccatagtctcgaagacctcgaggcgcagttc
cccgaactcgtcaccgattcctcaccgacgcagaccgtcggcggcgtcgtcgacacctcg
accttcgacccggtcgaacacatcggtccgatgtacagcctcgacaacgtcttcgactat
gaggaactgcgagcctggtacgaacgggtacggtcggccacctcggtgaagtcgaagttc
ctgtgcgaactcaagatcgacgggctcgccgtcaatctgctctaccggaacggcgaactc
gtgcgggcggcgacccgcggcgacggacgcataggtgaggacatcaccgcgaatgtgcgc
acgatctccgatatcccgcaccgcctcgacaccgagcatccgccggccgaggtcgagatc
cgcggcgaggtgttcttccccgtcgaggatttcgccgaactcaacgcctccctcgtcgcc
gagggcaaggccccgttcgcgaatccgcggaactccgcggccggttcgctgcggcagaag
gacccggccgtcaccgcacgccggcccctgcacatgctcgtccacggaatcgccgtgtgg
acaccggccgatgattcgcatcctgaaccggcccaccagtccgaggtctacgagcagttc
cggtcctggggtctgccgatcagcgactatttcaaggtcctcgacaccgtcgacgagatc
gaagacttcatctcctactacggcgaacaccgtcacgatgtcacccacgagatcgacgga
atcgtcatcaagatcgacgatatcgccgtgcaggagacgctgggctacacctctcgcgca
ccgaggtgggcgacggccttcaaatacccgcccgaggaagtcacgacgaagctcatcgac
atccaggtgcaggtgggtcggaccgggcgagtgaccccattcgccgtgatggaaccggtc
accgtggcaggatcgaccgtcgagcgggcgaccctgcacaacggttacgaggtcaaacgc
aagggtgtgctcatcggcgacaccgtcaccctgcgcaaggccggcgacgtcatccccgag
gtgttaggcccggtcgcggccctgcgggacggatccgaacacgaattcgtcatgcccacc
cactgcccgtcatgcggaaccgagctcggtgagcagagggagggcgacaaggatctgcgg
tgcccgaattctcgatcgtgcccggcacagctggccaaccgcatcttctacctcgcctcc
cgcgcggccttcgacatcgaagccctcggcgaggaggctgcactggcgctgacggcgccg
gccgaaccggacacgcccccgctgacgtcggaggccttcctcttcgacctcaccccggag
gatctggccgaggtcaagatctggcggaacaagaagtcgaagggagtggagaccggtgag
cgtgagctcgtgccgtacttctacacccggggaacagcgaagaagccgagcgccccgagc
gcgaacacgaagaagctcttcgacgagctggagaaggcgaaggatcaggatctgtggcgg
gtgctagtcgccttgtcgatccgccatgtcggaccgaccgccgcacggacactggccgcg
aagttccgcaccctcgaggccatccgtgaggccagcctagaggagctctccgccgtcgag
agcatcggtccgacgatcgcccagagcatccgcgattggttcgagatcgactggcacgtc
gaaatcgtcgagacctgggcggccgcaggggtgcggatggaagacgacgaggtcgaggcc
gccgagcagaccctcgaagggctgacgatcgtggcgaccggatcactgagctcgttcacc
cgcgacggaatcaaggaggcgatcctcggcgccggcggcaaggcggcgggttcggtgtcg
aagaaaaccgactacgtcgtcgccggtgagaacgccgggtcgaagttggagaaagctgag
tcgctgggcgtgcccgtcctcgacgaggaccagttcagggttctgctggagaccggcaga
ctcgactga
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