Brevundimonas sp. NIBR11: KKHFBJBL_00917
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Entry
KKHFBJBL_00917 CDS
T10976
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bren Brevundimonas sp. NIBR11
Pathway
bren03030
DNA replication
bren03410
Base excision repair
bren03420
Nucleotide excision repair
bren03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bren00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KKHFBJBL_00917 (ligA)
03410 Base excision repair
KKHFBJBL_00917 (ligA)
03420 Nucleotide excision repair
KKHFBJBL_00917 (ligA)
03430 Mismatch repair
KKHFBJBL_00917 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bren03032
]
KKHFBJBL_00917 (ligA)
03400 DNA repair and recombination proteins [BR:
bren03400
]
KKHFBJBL_00917 (ligA)
Enzymes [BR:
bren01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KKHFBJBL_00917 (ligA)
DNA replication proteins [BR:
bren03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KKHFBJBL_00917 (ligA)
DNA repair and recombination proteins [BR:
bren03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KKHFBJBL_00917 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KKHFBJBL_00917 (ligA)
MMR (mismatch excision repair)
DNA ligase
KKHFBJBL_00917 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KKHFBJBL_00917 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
WGM30687
LinkDB
All DBs
Position
complement(966820..969138)
Genome browser
AA seq
772 aa
AA seq
DB search
MADPSVESLSETEAQAELARLAAEMARHDALYAEAAPEISDADYDALRARNLAIEARFPA
LVREDSPSNKVGAPRNSQFAEVRHGVPMLSLDNAFDDGDVTDFVARIRRFLNLPADEVVA
FVAEPKIDGLSANLRYENGILVQGATRGDGRAGEDITANLKTLKDIPHRLKGSGWPAVIE
VRGEVYAPNDAFAAFNAEAEAAGRRTYANPRNFAAGSLRQIDPTVTAQRPLSFFAYAWGE
TSEPFATTQAEALEKFESWGFPVNPRSTRVEGAEGLVAIYHGLETDRAGLGYDIDGVVYK
VDRLDWQNRLGFVSRSPRWAIAHKFPAQQATTVVEGIDIQVGRTGSLTPVARLAPVTVGG
VVVRNATLHNEDEIERKDVRIGDTVILQRAGDVIPQIVSVVSDKRPADAVPYVFPTHCPV
CGSEAVRPEGEVRRRCTGGLICAAQLVERLKHFVSRRAFDIEGLGEKQLIAFHERGWIHE
PADIFRLARDSEKLDALREEDGYGETSVRNLVAGIDARRTIALERLLFGLGIRDIGDQTS
LLLARHFGDWKSFHAAALEAASGIPSPEWTQLAEGHGVSARTLSVMAAAELSLADPWPEA
PLDQKLALAFPGVAAPARRALAELTTDWTSIVEMARIAREDGPSATLGEIAGVSGVGPVA
ARAIAEFFHEPHNQAVVANLIEQLDTIEDAERPKSDTPVAGKTVVFTGALERFTRDEAKA
RAESLGAKVSGSVSRKTDYLVAGPGAGSKLADAQKHGVAVLTEDEWLALIGG
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atggccgatccctccgtcgaatccctgagcgaaaccgaggcccaggccgaattggcccgg
ctggctgccgagatggcgcgccacgacgccctctacgccgaggccgcgcccgagatcagc
gacgccgactacgacgccctgcgcgcccgcaacctcgccatcgaggcgcgtttcccggcc
ctggtccgcgaggattcgccgtcgaacaaggtcggggcgccgcgcaacagccagttcgcc
gaggtccgccacggcgtgcctatgctgtcgctggacaacgctttcgacgacggcgacgtc
acggatttcgtcgcccgcatccggcgctttctcaacctgccggcggacgaggtcgtggcc
ttcgtcgccgaacccaagatcgacgggctttccgccaatctgcgctatgaaaatggaatt
ctggtccagggtgcgacccgcggcgacggtcgggcgggcgaggacatcaccgccaacctg
aagacgctgaaggacattccccacaggctgaaaggctccggctggcccgccgtgatcgag
gtgcgcggcgaggtctatgcaccgaacgacgccttcgcggccttcaacgcggaggccgag
gcggcggggcgacggacctatgctaatccccgcaatttcgccgccggatctcttcgtcag
atcgacccgactgtgaccgcccagcgtcccttgagcttcttcgcctacgcttggggcgag
acctcggagccgttcgccacgacgcaagccgaggcgctggagaagttcgaaagctggggc
ttcccggtcaatccgcgttcgacccgcgtcgagggcgcggagggcttggtcgccatctac
cacgggctcgagaccgaccgggcgggcctcggctacgacatcgacggcgtggtctacaag
gtcgaccggctggactggcagaaccgcctcggattcgtctcccgcagcccccgctgggcc
atcgcgcacaagtttccggcccagcaggcgacgaccgtggtggaaggcatcgacatccag
gtcggtcgcacgggctccctgacccctgtcgctcgtctggcccccgtgaccgttggcggc
gtcgtcgtccgcaacgccaccctgcacaacgaggacgagatcgagcgtaaggacgtccgt
atcggcgacaccgtcatcctgcagcgcgccggcgacgtcatcccgcagatcgtctcggtg
gtgtcggacaagcgccccgccgacgccgtgccttacgtcttcccgacccactgcccggtc
tgcggctccgaggccgtgcggcccgagggtgaggtgcggagacgctgcaccggcggactg
atctgcgccgcccagctggtcgaacggctcaagcatttcgtcagccgccgcgccttcgac
atcgagggtctgggcgagaaacagctcatcgccttccacgagcgcggctggatccacgag
ccggccgacatcttccgcctggcccgcgatagcgagaagctcgacgccctgcgcgaggaa
gacggttacggcgagacgagcgtaaggaacctcgtcgccggcatcgacgcccgccgcacg
atcgcgctggaacgcctgctgttcggcctcggcatccgcgacatcggcgaccagacgtcg
ctgttgctggcccgccatttcggcgactggaaaagcttccacgccgccgccctggaggcc
gcttccggcatcccctcccccgaatggacacaactggccgagggccacggcgtctcggcc
cgcaccctgtcggtcatggcggcggccgagctgtcgctcgccgatccctggcccgaggcc
ccgttggaccagaagctggccctcgccttccccggcgtggccgcccctgcccgccgggcg
ctcgccgagctgaccaccgactggaccagcatcgtcgaaatggcccgaatcgcgcgcgaa
gacggcccctcagcgacccttggcgagatcgccggcgtctcgggcgtcggtcccgtcgcc
gcccgtgcgatcgccgagttcttccacgaaccgcataaccaggcggtcgtcgccaacctg
attgaacagctcgacacgatcgaggacgctgagcgtcccaaatccgacacccccgtcgcc
ggcaagaccgtcgtcttcaccggagcgctggaacgcttcacccgcgatgaggccaaggcc
cgggccgaaagcctgggcgccaaggtgtcgggttccgtgtccaggaagaccgactatctg
gtcgccggcccgggcgccgggtccaagctggccgacgcccagaagcacggcgtcgccgtc
ctgaccgaggacgaatggctggcgctcatcggcggctga
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