Brevundimonas sp. 'scallop': E4341_07590
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Entry
E4341_07590 CDS
T09204
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bres
Brevundimonas sp. 'scallop'
Pathway
bres03030
DNA replication
bres03410
Base excision repair
bres03420
Nucleotide excision repair
bres03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bres00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E4341_07590 (ligA)
03410 Base excision repair
E4341_07590 (ligA)
03420 Nucleotide excision repair
E4341_07590 (ligA)
03430 Mismatch repair
E4341_07590 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bres03032
]
E4341_07590 (ligA)
03400 DNA repair and recombination proteins [BR:
bres03400
]
E4341_07590 (ligA)
Enzymes [BR:
bres01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E4341_07590 (ligA)
DNA replication proteins [BR:
bres03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E4341_07590 (ligA)
DNA repair and recombination proteins [BR:
bres03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E4341_07590 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E4341_07590 (ligA)
MMR (mismatch excision repair)
DNA ligase
E4341_07590 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E4341_07590 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Zn_ribbon_NUD
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QIF81574
LinkDB
All DBs
Position
complement(1537205..1539550)
Genome browser
AA seq
781 aa
AA seq
DB search
MTTAMANAIPLEVPVEDLTAETAAEALAWLAAEMARHDALYNEATPEISDAEYDALRARN
LAIETAFPDLIRPDSPSNKVGAAASTQFAEVRHGVPMLSLDNAFDEGEVRDFVARIARFL
KLPADEPIAFVAEPKIDGLSANLLYVDGKLTIGATRGDGRAGEDVTANLNTIADVQQTLA
GDDWPDRIEIRGEVYAPNDAFAAFNAAAEAEGRRTYANPRNFAAGSLRQKDARITAKRPL
NFFAYAWGEHSSDFAETQWEALQKLEAWGFPVNARSRQVEGAEGLIAVYRELERDRATLG
YDIDGVVYKVDRIDWQRRLGFVARSPRWAIAHKFPAQQATTVLEGIDIQVGRTGSLTPVA
RLHPVTVGGVVVRNATLHNEDEIERLDVRIGDTVRLQRAGDVIPQILGVVPDLRPADAVP
YVFPEHCPVCGSEAVREGDEVKRRCTGGLICDAQIVERLKHFVGRRAFDIEGLGEKQLVA
FHARGWIKEPADIFRLARDEARLKELERDDGYGETSIRNLVAGIDARRVIALDRFLFGLG
IRDIGEQTSIVLARAFESWAALKAACLQAASGVPSDAWTELAAAHAISPRVLALMAEAKP
PAVDPWPEAMMDMKISQAFPGMAAPARRSLATMASDWSGLVKLARVAREDGPSEILNQIA
GVTGVGPVAAEALAHFFHEPHNLKVVEALEAELTEILDAERPKSDTAVAGKTVVFTGALE
RFTRDEAKARAESLGAKVSGSVSKKTDYLVAGPGAGSKLKDAEKHDVQVLTEDEWLALIG
G
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgacgacggccatggccaacgcgattcctctcgaagtccccgtcgaagacctaaccgcc
gagacggccgccgaggccctggcctggctggccgccgaaatggctcgacacgacgcgctg
tacaacgaggcgacgcccgagatttccgacgcggaatacgacgccctgcgtgcgcgcaac
ctggcgatcgaaaccgccttccctgatttgatccgccccgactcgccgtcgaacaaggtc
ggcgccgccgcctcaacccagttcgccgaggtgcgccacggcgtgcccatgctgtcgctg
gacaacgccttcgacgagggcgaggtgcgcgacttcgtggctcggatcgcacgcttcctg
aaactgcccgccgatgaaccgatcgcctttgtcgccgagcccaagatcgacggcctgtcc
gccaaccttctttatgtcgacggcaagctgacgatcggcgccacgcgcggcgacggccgc
gcgggcgaggacgtcaccgccaatctgaacaccatcgccgatgtgcaacagaccctggct
ggcgacgactggcccgatcggatcgagatccggggcgaggtctatgcgccaaacgatgcc
ttcgccgccttcaacgccgccgccgaggccgagggccgccggacctacgccaacccccgc
aatttcgccgccggctccctgcgccagaaggacgcccggatcacggccaaacgcccgctg
aacttcttcgcctacgcctggggcgaacactccagcgacttcgccgagacccagtgggag
gccctgcaaaagctcgaagcctggggcttccccgtcaacgcccgttcgcgccaggtcgag
ggcgcagagggcctgatcgccgtctatcgcgaactggaacgcgaccgcgcgaccctgggc
tatgacatcgacggcgtggtctacaaggtggatcgcatcgactggcaacgccgcctgggc
ttcgtcgcccgcagtcctcgctgggccatcgcccacaagttcccggcccagcaagcgact
acggtgctggagggcatcgacatccaggtcggccgcaccggctccctgacccccgtcgcc
cggctgcaccccgtcaccgtcggcggtgtagtggtcaggaacgccaccctgcacaatgaa
gacgagatcgaacgtctggatgtccgcatcggcgacaccgtccgcctgcaacgggccggc
gacgtcatcccccagatcctgggcgtggtcccggacctgcgccccgccgacgccgtcccc
tatgtcttcccagaacattgccccgtctgcggttcggaagctgtgcgcgaaggcgacgag
gtcaaacgccgctgcaccggcggcctgatctgcgacgcccagatcgtcgagcgcctcaag
catttcgttggccgccgcgccttcgacatcgagggattgggcgaaaagcagttggtcgcc
ttccatgcgcggggctggatcaaggagccggccgacatcttccgcctggcgcgcgacgag
gcgcggctgaaggaactggagcgcgacgacggttatggcgagaccagcatccgcaacctg
gtcgccggcatcgacgcccgccgcgtcatcgcgctggaccggtttctgttcggtctggga
atccgcgacatcggcgaacagacctccatcgttctggcccgcgccttcgagagctgggcc
gcgcttaaggccgcctgtctccaggccgcttcgggtgtgccgtccgacgcctggaccgaa
ctggccgccgcccacgccatatcgccccgcgtcctggccctgatggccgaggcgaagccc
cccgccgtcgatccctggcccgaggcgatgatggacatgaagatcagccaggcctttccc
ggcatggccgccccggcccgccgatcgttggcgacgatggcgagcgactggtccggcctg
gtcaaactggcccgggtcgcgcgcgaggacggcccatccgaaatcctgaaccagatcgcc
ggcgtcaccggcgtcggtcccgtagcggccgaggccctggcgcacttcttccacgagccg
cacaatctcaaagtcgtggaggctctggaagcagagctgaccgaaatcctcgacgccgaa
cgccccaaatccgacactgcggtcgccggcaagaccgtcgtcttcaccggcgccttggaa
cgcttcacgcgcgacgaggccaaagcccgcgccgaaagcctgggcgccaaggtgtcgggc
tcggtgtcgaaaaagaccgactacctcgtcgcgggccccggcgccggctccaagctcaag
gacgccgagaagcacgacgtccaggtgctgaccgaggacgaatggctggccctgattggc
ggctga
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