Brevundimonas sp. SGAir0440: E7T10_08630
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Entry
E7T10_08630 CDS
T06410
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
brev
Brevundimonas sp. SGAir0440
Pathway
brev03030
DNA replication
brev03410
Base excision repair
brev03420
Nucleotide excision repair
brev03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
brev00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E7T10_08630 (ligA)
03410 Base excision repair
E7T10_08630 (ligA)
03420 Nucleotide excision repair
E7T10_08630 (ligA)
03430 Mismatch repair
E7T10_08630 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
brev03032
]
E7T10_08630 (ligA)
03400 DNA repair and recombination proteins [BR:
brev03400
]
E7T10_08630 (ligA)
Enzymes [BR:
brev01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E7T10_08630 (ligA)
DNA replication proteins [BR:
brev03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E7T10_08630 (ligA)
DNA repair and recombination proteins [BR:
brev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E7T10_08630 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E7T10_08630 (ligA)
MMR (mismatch excision repair)
DNA ligase
E7T10_08630 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E7T10_08630 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Zn_ribbon_NUD
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QCQ98726
UniProt:
A0A4V1F872
LinkDB
All DBs
Position
complement(1755150..1757501)
Genome browser
AA seq
783 aa
AA seq
DB search
MTTAMANAIPLEVPVEDLTAETAAEALAWLAAEMARHDALYNEATPEISDADYDAMRARN
LAIETAFPDLVRPDSPSNKVGAAASTQFAEVRHGVPMLSLDNAFDEGEVRDFVARITRFL
KLPADKPIAFVAEPKIDGLSANLLYVDGRLTIGATRGDGRAGEDVTANLNTIADVQQTLA
GDDWPDRIEVRGEVYAPNDAFAAFNAAAEAEGRRTYANPRNFAAGSLRQKDARITAKRPL
NFFAYAWGEHSSDFAETQWDALQKLKAWGFPVNARSRRVEGAEGLIAVYRELERDRATLG
YDIDGVVYKVDRIDWQRRLGFVARSPRWAIAHKFPAQQATTVLEGIDIQVGRTGSLTPVA
RLHPVTVGGVVVRNATLHNEDEIERLDVRIGDTVRLQRAGDVIPQILGVVPELRPADAVP
YAFPEHCPVCGSEAVREGDEVKRRCTGGLICDAQIVERLKHFVGRRAFDIEGLGEKQLIA
FNARGWIKEPADIFRLARDEARLKALERDDGYGETSIRNLVAGIDARRVISLDRFLFGLG
VRDIGEQTSIVLARAFESWPALKAACLQAASGVPSDAWTELAAAHAISPRVLALMAEAKP
PAVDPWPEATMDMKISQAFPGMAAPARRSLATMANDWSGLVELARVAREDGPSEILNQIA
GVTGVGPVAAEALAHFFHEPHNLRVVEALEAELTQILDAERPKSDTAVAGKTVVFTGALE
RFTRDEAKARAESLGAKVSGSVSKKTDYLVAGPGAGSKLKDAEKHGVHVLTEDEWLALIG
DGS
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgacgacggccatggccaacgcgattcctctcgaagtccccgtcgaagacctcaccgcc
gaaacggccgccgaggccttggcttggctggccgccgaaatggcccgtcacgacgcgctg
tacaacgaggcgacgcccgagatttccgacgccgactacgacgccatgcgtgcgcgcaac
ctggcgatcgaaaccgccttccctgatctggtccgccccgactcgccgtcgaacaaggtt
ggagccgccgcctcaacccagttcgccgaggtgcgccacggcgtgcccatgctgtcgctg
gacaacgctttcgacgagggcgaggtgcgcgatttcgtcgcccggatcacccgtttcctg
aaactgcccgccgacaaaccgattgccttcgtcgccgagcccaagatcgacggcctgtcc
gccaatctgctctatgtcgatggaagactgacgatcggcgccacgcggggcgatggccgc
gcgggcgaggacgtcaccgccaatctgaacaccatcgccgatgtgcaacagactttggcc
ggcgacgactggcccgaccggatcgaggtgcgtggcgaagtctatgcgcccaacgacgcc
ttcgccgccttcaacgccgccgccgaggccgaagggcgccgcacctacgccaacccccgc
aacttcgccgccggctccctgcgccagaaggacgcccggatcaccgccaaacgtccgctg
aacttcttcgcctacgcctggggcgaacactccagcgacttcgccgagacccagtgggac
gccctgcaaaagctcaaggcctgggggttccccgtcaacgcccgctcgcgccgggtcgag
ggcgccgagggcctgatcgccgtctatcgtgagctggaacgcgatcgcgcgaccctgggc
tatgacatcgacggcgtggtctacaaggtggatcgcatcgactggcaacgccggctgggc
ttcgtcgcccgcagcccccggtgggccatcgcccacaaatttccggcccagcaggccacc
actgtgctggagggcatcgacatccaggtcggccgcaccggctccctgacccccgtcgcc
cggttgcatcccgtcaccgtcggcggtgtcgtggtgcgcaacgccaccctgcacaatgaa
gacgagatcgagcgtctggatgtccgcatcggcgacaccgtccgcctgcaacgcgccggc
gatgtcatcccccagatcctgggcgtggtcccggagttacgtcccgccgacgccgtcccc
tatgccttccctgaacactgccccgtctgcggctcggaagccgtgcgcgaaggcgacgag
gtcaagcgtcgctgcaccggtggcctgatctgcgacgcccagatcgtcgaacggctgaag
catttcgtcggccgccgcgcctttgacatcgagggtctgggcgagaaacagttgatcgcc
ttcaatgcgcgcggctggatcaaggagccggccgacatcttccgtctggcgcgcgacgag
gcgcggttgaaggcgctggaacgcgacgacggttatggcgagacgagcatccgcaatctg
gtcgccggcatcgacgcccgccgcgtcatttcgctggacagattcctgttcggcttggga
gtccgcgacatcggcgaacagacgtccatcgtcctggcccgcgccttcgagagctggccc
gcgctgaaggccgcctgcctccaggccgcttcgggtgtgccgtccgacgcctggaccgaa
ctggccgccgcccacgccatatcgccccgcgtcctggccctgatggccgaggctaagccc
cccgccgtcgatccctggcccgaggcgacgatggacatgaagatcagccaggccttcccc
ggcatggccgccccggcccgccggtctctggcgacgatggcgaacgactggtccgggctg
gtcgaactggcccgtgtcgcgcgcgaggacggtccgtccgaaatcctgaaccagatcgcc
ggcgtcaccggggtcggccccgtcgcggcggaggccctggcccacttcttccacgagccg
cacaatctgagggtcgtagaggctttggaagccgaactgacccagatcctcgacgccgaa
cgccccaagtccgacacggcggtcgccggcaagaccgtcgtcttcaccggcgccctagag
cgcttcacccgcgacgaggccaaggcccgcgctgaaagcctgggcgccaaggtgtcgggt
tcggtgtcgaaaaagaccgactatctcgtcgccggccccggagcaggctcaaagctcaag
gacgccgagaaacatggcgtccatgtgctgaccgaggacgaatggctcgcccttatcggc
gacggaagttga
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