Bdellovibrio reynosensis: MNR06_11620
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Entry
MNR06_11620 CDS
T08711
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
brey
Bdellovibrio reynosensis
Pathway
brey03030
DNA replication
brey03410
Base excision repair
brey03420
Nucleotide excision repair
brey03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
brey00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MNR06_11620 (ligA)
03410 Base excision repair
MNR06_11620 (ligA)
03420 Nucleotide excision repair
MNR06_11620 (ligA)
03430 Mismatch repair
MNR06_11620 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
brey03032
]
MNR06_11620 (ligA)
03400 DNA repair and recombination proteins [BR:
brey03400
]
MNR06_11620 (ligA)
Enzymes [BR:
brey01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MNR06_11620 (ligA)
DNA replication proteins [BR:
brey03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MNR06_11620 (ligA)
DNA repair and recombination proteins [BR:
brey03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MNR06_11620 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MNR06_11620 (ligA)
MMR (mismatch excision repair)
DNA ligase
MNR06_11620 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MNR06_11620 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Nlig-Ia
HHH_3
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
UOF00345
LinkDB
All DBs
Position
2481849..2483849
Genome browser
AA seq
666 aa
AA seq
DB search
MSKKRHEELKKIISHHDYHYHVKDSPQISDYEYDQLFSELLKIEASEKNLDLSDSPSQRV
GGAPLGAFEKASHRLPMLSLSNSYSPEDIFDFDERVKKFLKTDKEIEYLCEPKFDGLSME
LIYENGQFVRALTRGDGTVGEDVSQGIRTIKSIPLKLPLKTPPPLLEVRGEVLMFKQDFA
KLNETQQENGLQTFANPRNAAAGSVRQLDPRITASRPLRFFAYALGAMEGVEFKTQADIG
NYFSEANIPTVQTKEDLELVKKATGPQAVVDYYHFIEKVRPKLPFDIDGVVIKVNSLRLQ
DDLGLVARSPRWATAAKFKPEQAQTVIEDIAVQVGRTGALTPVAIMTPVKVGGVTVTNST
LHNQDEINRKDVRIGDTVIIQRAGDVIPEVVSVILDKRPKSSKPFLIPDHCPACGSKVVK
AEEEVVTRCVNPLCIAVVKESLKHFVARRAMNIDKVGDRLIETLVDNKLLAKFSDFYRLT
KEDILSLERQGDKSAENIINSVENSKTPTLARFIFALGIRFVGEQTAKHLADHFVNIENF
LKASEEELLQVPEIGPKVAKAIATWTGNKVLVKEVHDMIKLGVNITNPVRSTEGALSGMS
FLITGTLPVKRDDAKDVIEQNGGKILSSVSSKLSYLVVGDDPGSKVEKAQSLGVKIISWD
DLQKML
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaaagcgccacgaagagctcaagaagattatttcccaccatgactaccactat
cacgtcaaggacagtccacagatctcagattacgagtatgatcaactcttcagtgagcta
ttaaaaatcgaagctagcgaaaagaatttagaccttagcgattcaccttctcaacgtgtc
ggtggggctccattaggtgcttttgaaaaggcttcgcaccgtttgccgatgttgtcttta
tcgaacagttattcgcctgaggacatttttgattttgatgaacgcgtaaaaaagtttttg
aaaactgataaggaaatcgaatacctgtgcgaacctaagtttgacgggctttccatggaa
ttgatctatgaaaatggtcaattcgtgcgcgcactgactcgcggggatggcactgtcggt
gaagatgtcagtcaaggtattcgcactatcaaaagcattccactaaagcttccacttaaa
acaccaccgcctttgcttgaggtgcgtggtgaggttttgatgttcaaacaagacttcgca
aaacttaatgaaactcagcaagaaaatggtttacaaacctttgctaatccaagaaacgca
gctgcgggatcagttcgtcagttagatccccgaatcacggcttcacgtcctctgcgtttc
tttgcctatgctttaggcgctatggagggtgtagaatttaaaacccaagctgacattggt
aattatttttctgaagcaaacatccctactgtgcaaaccaaagaggatcttgagctagtt
aaaaaggccacaggcccgcaagcggtggtcgactattaccacttcatcgaaaaagtcagg
ccaaaacttccatttgatattgatggtgttgttatcaaagttaactccctacgtctgcaa
gatgatctaggtcttgtagcgcgtagcccacgttgggctacggccgctaagtttaaacct
gaacaagcgcaaactgtgattgaagatatcgctgtccaagtgggaagaaccggcgcttta
actccggttgcgatcatgacgccagtaaaagtaggcggtgtcacagtaacgaattctact
ttgcacaatcaagatgagatcaatcgtaaagatgtgcgcattggtgacacagtcatcatt
caacgtgccggcgatgtgatccccgaggtcgtatctgtgatcttggacaagcgtccaaag
agcagcaaaccgttcttaattcctgatcattgtcctgcgtgtggatcaaaagtggtgaaa
gctgaagaagaggttgtcactcgctgtgtgaatccgctttgtatcgcggtcgttaaagaa
tccttaaaacattttgtcgcgcgcagagcgatgaatattgataaagtcggtgatcgttta
attgaaacacttgttgataataagttgcttgcgaagttttcagatttttatcgacttact
aaagaagacattctttctttagaacgccaaggcgataagtcggctgaaaatatcattaac
agcgttgaaaacagcaaaacaccgacactagcgcgttttatttttgccttagggattcgc
ttcgtcggtgaacagacagcgaaacacttggctgatcattttgttaatattgaaaatttc
ctaaaggcctctgaagaagaacttttgcaagttcctgaaatcggtccgaaggtggctaaa
gcaattgctacttggactggaaacaaagttctagtgaaagaggttcacgacatgattaag
cttggcgtgaacatcacaaatcctgtgcgctctactgaaggggcgttatctggaatgagt
tttttaatcaccggcactttgccagtaaaacgcgatgatgccaaagacgtcatcgaacaa
aatggcggtaagattttaagctctgtatcttcgaagcttagttatttggtggtcggcgat
gacccgggatctaaagttgagaaagcacaaagcttgggtgtgaaaatcatctcgtgggat
gatttacagaagatgctttaa
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