Mycetohabitans rhizoxinica: RBRH_03584
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Entry
RBRH_03584 CDS
T01355
Name
(GenBank) NAD-dependent DNA ligase (EC 6.5.1.2)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
brh
Mycetohabitans rhizoxinica
Pathway
brh03030
DNA replication
brh03410
Base excision repair
brh03420
Nucleotide excision repair
brh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
brh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RBRH_03584
03410 Base excision repair
RBRH_03584
03420 Nucleotide excision repair
RBRH_03584
03430 Mismatch repair
RBRH_03584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
brh03032
]
RBRH_03584
03400 DNA repair and recombination proteins [BR:
brh03400
]
RBRH_03584
Enzymes [BR:
brh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RBRH_03584
DNA replication proteins [BR:
brh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RBRH_03584
DNA repair and recombination proteins [BR:
brh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RBRH_03584
NER (nucleotide excision repair)
GGR (global genome repair) factors
RBRH_03584
MMR (mismatch excision repair)
DNA ligase
RBRH_03584
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RBRH_03584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
CBW75016
UniProt:
E5AQY4
LinkDB
All DBs
Position
1376466..1378511
Genome browser
AA seq
681 aa
AA seq
DB search
MSRMMFPPSADRPAERAAWLRTELDRANHAYYVLDRPEIPDAEYDKLFKELEQIEADHPD
LITPDSPTQRVGGAVAEGFAPIVHDVPMLSLNNGFEDSDVDAFDKRVSDVLQHGDVEYAC
ELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTANVRTIRSLPLTLNGNAVPKVIDVRG
EVLMFKRDFERLNARQREAGQREFANPRNAAAGSLRQLDSRITAKRPLSFFAYGIGVLDG
VPMPDTHSALLDWYVNMGLPVNKERAVVRGAAGLLVFFRGVGARRASLPYDIDGVVYKVN
RRDEQDRLGFVSRAPRFALAHKFPAEEALTRLLAIEVQVGRTGAITPVARLEPIFVGGAT
VTNATLHNEDEVRRKDILIGDTVIVRRAGDVIPEVVGAIKERRPVDARPFTMPTHCPVCG
SAIERLPDEAIARCTGGLVCAAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQSLIRTPA
DLFSLGFATVAQLDRFADKSAQNLIDSLERARHTTLPRFIYALGIRHVGEATARDLARHF
GSLNALIDASEEALLEVNDVGPVVAEAIRHFFSEPHNRMVIEQLRAAGVQWPEGPPAPRK
PAGPLAGMTVVLTGTLPTLSREAAKERLEAAGAKVAGSVSKKTNYVVAGADAGSKLTKAE
ELGIPIVDEEGMRRLLEGEQQ
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgcatgatgtttccgccatccgcagaccgcccggccgagcgtgccgcctggctg
cgcacggagcttgatcgcgccaatcacgcgtattacgtgctcgatcgaccggagatcccg
gatgccgagtatgacaagctgttcaaggaactcgagcagatcgaggcggaccatccagat
ctgatcacgcccgactcgcccacgcaacgtgtcggtggtgcggtcgccgaaggctttgcg
cccatcgttcacgacgtgccgatgctgtcgctgaacaatgggttcgaggacagcgacgtc
gacgcgttcgacaagcgcgtcagtgatgtgctgcagcacggtgacgtcgaatacgcatgc
gagctaaagttcgatggcctggcaatctcgctgcggtatgagaacggccgcttcgtgcag
gcttccacgcgtggcgacggcacgactggcgaggatgtgaccgcgaacgtgcgcaccatt
cggtcactgccattgacactcaacggcaacgcggtgccgaaagtcatcgatgtgcgcggc
gaagtgctgatgttcaagcgcgattttgagcgactcaacgcgcggcagcgcgaggcgggc
cagcgtgaattcgcgaacccacgcaacgcggcagccggcagtcttcggcagcttgattcg
agaatcaccgcgaagcgtccattgtcgtttttcgcgtacggcatcggcgtactcgacggc
gtgccgatgccggacacgcattcggcgctgctcgactggtacgtcaacatgggcttgccg
gtgaacaaggaacgggcggtggtccgcggtgcagcaggcctgctcgtgttcttccgcggc
gtgggcgcgcgccgcgcgtcgctgccatatgacatcgacggcgtcgtctacaaagtcaac
cggcgtgacgagcaggaccggctcggtttcgtgtctcgtgcgccgcgctttgcgctggcg
cacaagtttccggccgaggaagcgctgacccggctgctggcgatcgaggtgcaggtcggc
cgtaccggcgcgatcacgcccgttgcgcggctcgagccgatcttcgtcggtggcgccacg
gtgaccaatgcaacgctgcacaatgaggacgaggtacgtcgcaaggatatcctgatcggg
gacaccgtcatcgtgcgccgcgccggcgacgtgattccggaagtggtcggtgctatcaag
gagcgccggccggtcgatgcgcggcctttcacgatgccaacccactgtccggtctgtggt
tccgcgatcgaacggctgccggacgaggcgatcgcgcgatgcacgggcggattggtctgc
gccgcgcagcgcaagcaggcgttgtggcatttcgcgcagcggcgcgcactcgacatcgat
gggctcggcgagaagatcatcgatcaattagtcgagcagagcctgattcgtacgcccgcc
gacctgttcagcctcggctttgcgacggtggcgcaactggaccgtttcgcggacaagtct
gcgcagaacctgatcgactcgttggagcgcgcgcgccatacgacgttgccgcggttcatc
tatgcgctgggcattcgacacgtaggcgaggcgaccgcaagggacctggcccggcatttc
ggctcgctcaatgcgttgatagacgccagcgaggaggcgctgctcgaggtcaacgacgtt
ggccccgtggtcgcggaggcgatccgccatttcttctcggagccgcataaccggatggtg
atcgagcaactgcgtgcagccggcgtgcagtggcccgaagggccgccggcaccccggaaa
ccggccgggccgcttgccggcatgacggtggtgctgaccggcacgttgccgaccctatcc
cgcgaggcagcgaaggagaggctggaggccgctggtgcgaaggtcgcgggatcggtgtcg
aagaagacgaattacgtggtggccggagccgacgcgggcagcaagctgacgaaggccgag
gagttgggcattccgattgttgacgaagaagggatgcgtaggcttttagagggtgaacag
caatga
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integrated database retrieval system
