Brachybacterium sp. NBEC-018: NLU66_10130
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Entry
NLU66_10130 CDS
T08499
Name
(GenBank) helix-hairpin-helix domain-containing protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
brha
Brachybacterium sp. NBEC-018
Pathway
brha03030
DNA replication
brha03410
Base excision repair
brha03420
Nucleotide excision repair
brha03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
brha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NLU66_10130
03410 Base excision repair
NLU66_10130
03420 Nucleotide excision repair
NLU66_10130
03430 Mismatch repair
NLU66_10130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
brha03032
]
NLU66_10130
03400 DNA repair and recombination proteins [BR:
brha03400
]
NLU66_10130
Enzymes [BR:
brha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NLU66_10130
DNA replication proteins [BR:
brha03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NLU66_10130
DNA repair and recombination proteins [BR:
brha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NLU66_10130
NER (nucleotide excision repair)
GGR (global genome repair) factors
NLU66_10130
MMR (mismatch excision repair)
DNA ligase
NLU66_10130
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NLU66_10130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
UVY85737
LinkDB
All DBs
Position
2238309..2240810
Genome browser
AA seq
833 aa
AA seq
DB search
MTARIEQARAEYYEHDAPTLTDGEYDALEKELRALEAENPQLAKEDSPTQTVGGQAASGL
ATIDHAERMQSLDNVFSVQELRDWCAHAAEEIGGEVRWLTELKIDGLAINLRYEHGELVT
AATRGDGRTGEDITTNALRIEGIPRRLEGEGHPALVEVRGEVFMPTAAFARLNELQVELR
ERAVAESRTRWESRLATSRPFDEEREQLAATRRFPTFANPRNTAAGGLRQQLEKKEGLER
EAGEARLGALRLTVHGLGAWPDPPVGSQSEIYDLLASWGLPTSRYKDVVTSIDEVVAYVE
HHGEHRHDVEHEIDGIVVKVDHFAQQRRLGSTSRAPRWAIAFKYPPEEVTTRLIDIQVQV
GRTGRVTPFGVMEPVQVAGSTVEKATLHNQFEVERKGVLIGDMVVLRKAGDVIPEILGPV
DALRDGSETPFVMPEHCPSCGTEIRPEKEGDKDWRCPNTRDCPAQVTGRVEHAASRGGFD
IETLGEESAIALTDPEGRREEALAALRAGHAIYLPLRREEEFDSPVFVTVRGGQETQGND
GVPMLRITEETAGMLPAPQQPVVTTGANLFDLTPEQLEEVAVWQPLRRNGEPTGDWQLVP
AFWSRPQWRYYKSRGEWTLTKPAAPGANTQKLMDELAKAKEQPLWRVLVALSIRHVGPAA
ARSLATAYGTMDAIRAADLEALTETDGVGGIIAESLREWFTVDWHEEIVDAWAASGVRMA
DDVEEGFVKTLEGLTVVVTGGLEGYSRDGAKEAIISRGGKASGSVSKKTDFVVVGENAGS
KETKARDLGLRILDEAGFTTLLEQGPAGLPESEQAESEQAESGDADGAEAEQA
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
ctgaccgcccgcatcgagcaggcgcgcgcggagtactacgagcacgacgcccccaccctc
accgacggcgagtacgacgccctcgagaaggagctgcgtgcgctcgaggcggagaacccg
cagctcgccaaggaggactcgcccacgcagaccgtcggcgggcaggccgcctccggcctc
gcgacgatcgaccacgccgagcgcatgcagagcctggacaacgtgttctccgtgcaggag
ctgcgggactggtgcgcccacgccgcggaggagatcggcggcgaggtgcgctggctgacg
gagctcaagatcgacggcctcgcgatcaacctccgctacgagcacggcgagctcgtcacc
gccgccacccgcggcgacggccgcaccggtgaggacatcacgaccaacgccctgcgcatc
gaggggatcccgcgccgcctcgagggtgagggccaccccgccctggtcgaggtgcgcggc
gaggtcttcatgcccaccgccgccttcgcccgcctcaacgaactccaggtcgagctgcgt
gagcgcgccgtcgccgagtcccgcacccgctgggagtcccgcctggccacctcccggcct
ttcgacgaggagcgggagcagctcgccgcgacccggcgcttcccgaccttcgcgaacccc
cgcaacactgctgcgggcggtctgcgccagcagctcgagaagaaggagggcctcgagcgc
gaggcgggggaggcgcgcctcggggcgctgcgccttaccgtccacggcctcggcgcctgg
cccgatccgcccgtcggctcccagagcgagatctacgacctgctcgcctcctggggcctg
cccacgagccgctacaaggacgtcgtcacctcgatcgacgaggtcgtcgcctacgtcgag
caccacggcgagcaccgccacgacgtcgagcacgagatcgacggcatcgtcgtgaaggtc
gaccacttcgcgcagcagcggcgcctgggctccacctcccgcgccccgcgctgggcgatc
gccttcaagtacccgccggaggaggtcaccacccggctcatcgacatccaggtgcaggtg
ggccgcaccggccgcgtcacccccttcggcgtcatggagcccgtgcaggtcgccgggtcc
acggtcgagaaggcgacgctgcacaaccagttcgaggtcgagcgcaagggcgtgctcatc
ggggacatggtcgtgctgcgcaaggccggtgacgtgatccccgagatcctggggccggtg
gacgccctgcgcgacggctccgagacgcccttcgtcatgcccgagcactgcccctcctgc
ggcacggagatccgccccgagaaggagggcgacaaggactggcgctgccccaacacgcgc
gactgccccgcccaggtgacgggccgcgtcgagcacgccgcctcccgcggcggcttcgac
atcgagaccctcggcgaggagagcgcgatcgcgctcaccgacccggagggccgccgtgag
gaggccctcgccgccctgcgcgccggccacgcgatctacctcccgctgcggcgcgaggag
gagttcgactccccggtcttcgtgacggtccgcggcggccaggagacgcagggcaacgac
ggcgtccccatgctccgcatcaccgaggagaccgccggcatgctgcccgccccgcagcag
cccgtcgtcaccaccggggcgaacctcttcgacctcacgcccgagcagctcgaggaggtc
gccgtctggcagccgctgcggcggaacggggagccgacgggggactggcagctcgtgccc
gccttctggtcccggccccagtggcgctactacaagtcccgcggcgagtggacgctcacg
aagcccgccgcgcccggggcgaacacccagaagctcatggacgagctcgccaaggcgaag
gagcagccgctgtggcgcgtgctcgtcgcgctgtccatccgccacgtgggccccgccgcg
gcccgctccctcgcgaccgcctacggcacgatggacgcgatccgcgcggcggatctcgag
gcgctcaccgagaccgacggcgtgggcggcatcatcgccgagagcctgcgcgaatggttc
accgtggactggcacgaggagatcgtcgacgcctgggccgcgtccggcgtgcgcatggcg
gacgacgtcgaggagggcttcgtgaagaccctcgaggggctcaccgtcgtcgtcaccggt
ggtctcgagggctactcgcgcgacggcgcgaaggaggcgatcatctcccgcggcggcaag
gcctccggctccgtctcgaagaagaccgacttcgtggtggtgggggagaacgccggctcc
aaggagaccaaggcacgggacctcggcctgcggatcctggacgaggccggcttcacgacg
ctgctcgagcagggtcccgccgggctgcccgagtccgagcaggcggagtccgagcaggcg
gagtccggcgacgccgacggggccgaggcggagcaggcatga
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