Buceros rhinoceros silvestris (rhinoceros hornbill): 104497580
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Entry
104497580 CDS
T08612
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
brhi
Buceros rhinoceros silvestris (rhinoceros hornbill)
Pathway
brhi03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
brhi00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
104497580 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
brhi03000
]
104497580 (KDM2B)
04121 Ubiquitin system [BR:
brhi04121
]
104497580 (KDM2B)
03036 Chromosome and associated proteins [BR:
brhi03036
]
104497580 (KDM2B)
Enzymes [BR:
brhi01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
104497580 (KDM2B)
Transcription factors [BR:
brhi03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
104497580 (KDM2B)
Ubiquitin system [BR:
brhi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
104497580 (KDM2B)
Chromosome and associated proteins [BR:
brhi03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
104497580 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
104497580 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
F-box-like
F-box
zf-CXXC
LRR_4
AppA_SCHIC
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
104497580
NCBI-ProteinID:
XP_010139150
LinkDB
All DBs
Position
Unknown
AA seq
664 aa
AA seq
DB search
MKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSICN
EIIHPGCLKVKESDGVVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSLLKEQK
MNRDNKEVTDAAKRKGDCEETPRRKSEEHSKKPQVDSILRRKSDEVHLWRKRKFEKPQEP
TMRKRLKLGKEDKLFRKKRRSWKAPDDRTAMIKPLRRLKQEPEDDLPEAPPRSKDSDQSR
SSSPTAGPSTEGAEPRDKKKFKMRRKRRLPNKELSKELSKELNQEIQKTENSLANENHQP
IKSEPESENEEPKRALNNNERLHRFSKGLNGTPRDLRHQLIPSLRSTPRGIARPPPSLSP
PKCIQMERHVIRPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHRDLCICMRVCKTW
NRWCCDKRLWTKIDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRLPGLR
DLLLSGCSWIAVSALCSSSCPLLRTLDVQWAEGLKDAQMRDLLSPPTDNRPGQIDNRSKL
RNIVELRLAGLDITDASLRLIIRHMPLLSKLNLSYCNHVTDQSINLLTAVGTTTRDSLTE
INLSDCNKVTDQCLSYFKRCGNICQIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLL
QKLS
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaatttgggggacctggcaggatgaagcagtcctgcattatgaggcagtgtatt
gcaccggtgttgccccatactgctgtgtgtctggtgtgcggagaagccgggaaagaggac
accgtggaagaggaggagagcaagtttaatctcatgctaatggaatgctccatttgtaat
gaaatcatacacccaggatgccttaaggtgaaggaatcggatggtgtggtgaacgatgag
ctgccgaactgctgggagtgtccaaagtgcaaccatgcagggaaaactggaaaacaaaag
cgcggaccaggcttcaaatacgcatcaaatctcccaggctcgttgctgaaggaacagaaa
atgaacagagacaataaggaagtcacagatgctgcaaagcggaaaggggattgcgaagaa
actcccaggcggaaatcagaggaacattccaaaaagcctcaagttgactcgatcctgagg
agaaagtctgacgaggtgcatctgtggaggaaaaggaaattcgagaaaccccaggaaccc
actatgagaaagcggctaaaactgggaaaagaagacaaactcttcaggaagaagcggcga
tcgtggaaggctccagatgaccgaactgccatgatcaagcccctgcggcgcctgaagcag
gagccagaggatgacctgccagaagcacctcccaggtccaaggatagtgaccagtcacga
tccagctcgcccactgcaggtcccagcacggagggtgccgagcccagggacaagaagaag
ttcaagatgaggaggaaaaggcggcttcccaataaggaactgagcaaggagctcagcaag
gagcttaaccaggagatccaaaaaaccgagaacagccttgctaatgagaatcaccaaccc
atcaaatctgaaccagagagcgagaacgaggaacctaagcgtgctttgaacaacaacgag
agactccataggttcagcaaagggttgaacgggactccccgggacctgaggcaccagctc
atccccagcctgcgaagcacacctcggggaatagcccggccaccgccttcactctctcct
cccaaatgcattcagatggaacggcatgttatccggccgcctcccatcagcccccctccg
gactcgctccccctggatgacggggcagcccacgtgatgcagagggaagtctggatggct
gtctttagctacctcagtcatagggacttgtgcatctgtatgagagtttgcaagacctgg
aacagatggtgctgtgacaaaagactatggaccaaaatagatttaaaccattgtaaatcc
atcactccacttatgctcagtggcattattaggagacagcctgtaacccttgatcttagc
tggacaaatatatctaaaaagcagctgagttggcttatcaaccgactgccaggtcttcga
gacctgctgttatcagggtgctcatggatagcagtgtcggcactttgtagttccagttgt
cctttactccgaactctggacgtgcagtgggcagaaggactgaaagacgcacaaatgaga
gacctcttgtcaccacccaccgataaccggccaggtcagatcgacaaccggagtaagcta
cggaacatagtcgagctgcgtttggctggcctggatattacagatgcttctttgcggctg
atcataaggcacatgcctctgctctccaaactcaatctcagttactgtaaccacgtgacg
gatcagtctattaacctgctgaccgcggttggaaccaccacgcgggattcgttaacagaa
attaatttatcagactgcaataaggttactgaccagtgcctgtcttacttcaaacggtgt
ggaaacatctgccagatcgacctgaggtactgcaagcaagtgacaaaagaaggctgcgag
cagttcatcgcagagatgtcagtaagtgtccagttcgggcaggtggaagaaaaacttctg
caaaaactgagttag
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