Brevibacterium sp. CS2: FDF13_14290
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Entry
FDF13_14290 CDS
T05958
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bri
Brevibacterium sp. CS2
Pathway
bri03030
DNA replication
bri03410
Base excision repair
bri03420
Nucleotide excision repair
bri03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FDF13_14290 (ligA)
03410 Base excision repair
FDF13_14290 (ligA)
03420 Nucleotide excision repair
FDF13_14290 (ligA)
03430 Mismatch repair
FDF13_14290 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bri03032
]
FDF13_14290 (ligA)
03400 DNA repair and recombination proteins [BR:
bri03400
]
FDF13_14290 (ligA)
Enzymes [BR:
bri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FDF13_14290 (ligA)
DNA replication proteins [BR:
bri03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FDF13_14290 (ligA)
DNA repair and recombination proteins [BR:
bri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FDF13_14290 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FDF13_14290 (ligA)
MMR (mismatch excision repair)
DNA ligase
FDF13_14290 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FDF13_14290 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
BRCT_2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
QCP06308
UniProt:
A0A4P8HE88
LinkDB
All DBs
Position
complement(3183280..3185751)
Genome browser
AA seq
823 aa
AA seq
DB search
MTCSTKPAGDESTAEEPTAAAQDGAAKAADETPVSSASTSDASVSDASVSDASVSDASVS
DASDDDTSDSSSADVDLTDASARARYAQELTAAIEAHREAYFKHDAPTVSDAEYDALMVA
LRDLEERFPELVDDASPTQTVGGAVDTSTFAEVEHLSRMYSLDNVFSLEELRAWRARTDK
AVPAGTRFLCELKIDGLAVNLLYRDGELVRAATRGDGRTGEDITANVRTIADIPTRLDTE
FPPAEVEIRGEVFFPVERFTELNAALVEAGKAPFANPRNAAAGSLRQKDPQVTAARPLHM
LVHGIAAWTPAGPDHPEPAAQSEVYEQLRSWGLPISEYYRVLGAESEVEEYIDHYGEHRH
DVLHEIDGVVVKVDDIGTQEELGYTSRAPRWAIAYKYPPEEVTTRLLDIQVQVGRTGRVT
PFAVMEPVTVAGSTVSKATLHNAHEVKRKGVLIGDTVTIRKAGDVIPEVLGPVVAARTGD
EREFVMPAVCPSCGTALREMREGDKDIRCPNSRSCPAQVANRLFYLASRAALDIEALGEE
AALALTQPVAPEVPPLTSEAHLFDLTVEDLAEVEIEREKRVKGEPTGEIERVKYFYTKEE
RYVRGEKAGELKKPSVPRANTVKMLEEIAAAKERPLWRVLVALSIRHVGPTAARALAERF
RTMEALRGASLEELAEVEGVGPTIAESVVEWFGVDWHREIVDTWKDDGVVMADPEPEDSD
VPQTLAGLTIVATGSLEGFTRDGIKEAITGAGGKAASSVSKKTDYVVAGENAGSKLEKAE
SLGVPVLDEAAFAKLLAEGPASGDGDTADEDSDAAGYDVEAGS
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgacatgctcgacgaagccggcgggcgacgaatcgaccgccgaggagccgacggcagcg
gctcaggacggtgcggccaaggccgcggatgagactccggtgagcagcgcctcgaccagc
gacgcctcggtcagcgacgcctcggtcagcgacgcctcggtcagcgatgcctcggtcagc
gacgcctccgacgacgacacctcggacagcagctctgctgatgtcgacctcaccgacgcc
tcggcccgtgcccggtacgcgcaggagctcacggccgcgatcgaggcgcatcgcgaggcc
tacttcaagcacgatgcgccgaccgtgtcggacgcggagtacgacgcgctcatggtggcc
ctgcgggacctcgaggagcggttccccgagctcgtcgacgacgcctcgcccacgcagacc
gtcggcggcgccgtcgacacctcgaccttcgcggaggtcgagcacctgtcgcgcatgtac
agccttgacaacgtgttctccctcgaggagctgcgggcctggcgggcgcgcacggacaag
gcggtgccggccggcacccggttcctgtgcgagctcaagatcgacggcctcgcggtcaac
ctcctctaccgcgacggcgagctcgtgcgggccgcgacccgcggcgacggccgcacgggc
gaggacatcaccgcgaacgtgcggacgatcgccgacattccgacccggctcgacacggag
ttcccgccggcggaggtcgagatccgcggcgaggtgttcttccccgtcgagcgattcacc
gagctcaacgccgcgctcgtcgaggcggggaaggcgcccttcgccaacccgcgcaatgcc
gcggcgggttcgctgcgccagaaggatccgcaggtcaccgctgcgcgtccgctccacatg
ctcgtccatgggatcgccgcctggaccccggctgggccggatcatccggagcccgccgca
cagtcggaggtctacgagcagctgcggtcctggggtctgccgatcagtgagtactaccgg
gtgctcggtgccgagtcggaggtcgaggagtacatcgaccactacggcgagcaccgccac
gacgtgctccacgagatcgacggagtggtcgtcaaggtcgacgacatcgggacgcaggag
gagctcggatacacctcgcgcgccccgcgctgggcgatcgcatacaagtacccgccggag
gaggtcaccacccggctgctcgacatccaggtgcaggtcggccggaccggacgggtgacc
ccgttcgcggtgatggagccggtgaccgtcgcggggtccacggtgagcaaggcgaccctc
cacaacgcgcacgaagtcaagcgcaagggcgtgctgatcggcgacacggtgacgatccgg
aaggccggggatgtcatccccgaggtgctcggcccggtggtcgcggcacgcaccggggac
gagcgggagttcgtcatgcccgcggtgtgcccgtcctgcggaaccgcgctgcgggagatg
cgcgagggcgacaaggacatccggtgtccgaactcccggtcgtgcccggcgcaggtcgcg
aaccggctgttctacctcgcgtcccgggccgctctcgacatcgaggcgctgggggaggag
gccgcgctcgcgctcacgcagccggtcgccccggaggtgcctccgctgacgagcgaggca
cacctgttcgatctcaccgtcgaggacctcgccgaggtcgagatcgagcgggagaagcgg
gtcaagggcgagccgaccggcgagatcgagcgcgtcaagtacttctacaccaaggaggag
cggtacgtccgcggggagaaggcgggcgagctcaagaagccctcggtgccgcgggcgaac
accgtgaagatgctcgaggagatcgctgcggcgaaggagcgcccactgtggcgcgtgctc
gtggcgctctcgatccggcacgtcggcccgaccgcggcgcgggcgctcgcggagcgcttc
cgcacgatggaggcgctgcgcggtgcctcgttggaggagctcgccgaggtcgagggtgtg
ggtccgacgatcgcggagagcgtcgtcgagtggttcggcgtggactggcaccgggagatc
gtcgacacgtggaaggacgacggggtggtcatggccgacccggagcccgaggactccgac
gtgccgcagacgctcgcggggctgacgatcgtggcgaccgggagcctcgagggcttcacc
cgcgacgggatcaaagaggcgatcaccggtgcgggcgggaaggccgcgagctccgtgtcg
aagaagaccgattacgtggtcgccggggagaacgccggctcgaagctcgagaaggcggaa
tccctcggtgtgcccgtgctcgacgaggcggcattcgccaagctcctcgccgaggggccg
gccagcggcgatggcgacaccgcggacgaggacagcgatgccgccgggtacgatgttgaa
gccggcagctga
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