KEGG   Bradyrhizobium sp. SK17: CWS35_33525
Entry
CWS35_33525       CDS       T05325                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
brk  Bradyrhizobium sp. SK17
Pathway
brk03030  DNA replication
brk03410  Base excision repair
brk03420  Nucleotide excision repair
brk03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:brk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CWS35_33525
   03410 Base excision repair
    CWS35_33525
   03420 Nucleotide excision repair
    CWS35_33525
   03430 Mismatch repair
    CWS35_33525
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:brk03032]
    CWS35_33525
   03400 DNA repair and recombination proteins [BR:brk03400]
    CWS35_33525
Enzymes [BR:brk01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CWS35_33525
DNA replication proteins [BR:brk03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CWS35_33525
DNA repair and recombination proteins [BR:brk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CWS35_33525
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CWS35_33525
   MMR (mismatch excision repair)
    DNA ligase
     CWS35_33525
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CWS35_33525
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 DNA_ligase_ZBD PTCB-BRCT Nlig-Ia DUF4796_N AlkA_N RUBY_RBDX
Other DBs
NCBI-ProteinID: AUC98619
LinkDB
Position
complement(7208262..7210415)
AA seq 717 aa
MATKAKKTLVDVDKLTKAQAKVEHMRLTLEIEAHNERYYQNDAPTVSDAAYDALRRRLEA
IEARFPDLVTKDSPTQTVGAAPARGFAKVQHAVPMLSLGNAFSDEDVTEFVERIRRFLKL
DADQMPALVAEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDIPHTLKGR
NVPAACEMRGEVYMLKKDFLELNKKQAEADDTIFANPRNSAAGSLRQKDVSITASRPLKF
FAYTWGEMSEPPADTQHGMLQWMDRAGFVVNPLITLCKSVDDVLKFYARIGEERASLGYD
IDGVVYKVDRLDWQERLGFVSRSPRWAIAHKFAAEQATTILKGIDIQVGRTGAMTPVARL
EPVTVGGVVVSNATLHNEDYIKGIGNDGNPIRDGVDLRVDDTVVVQRAGDVIPQVVSVVL
DKRPKSAKPYKFPDTCPVCGSHAIREEGEAVRRCTGALICPAQAVERLKHFVSRLAFDID
GLGEKQIQEFYEDGLVKSPVDIFTLRERDERSSSKLMEREGYGETSVRNLFDAIDARRKI
ELHRLIFALGIRHVGEGNAKLLARHYHTIENFRDAMLAAARGSGDEENGTEAYQHLNDID
GIGEIVADAVVEFFAEPRNVKALGELLRQIEVKPAEQPRKSSPVSDKTVVFTGSLTKFTR
DEAKAMAERLGAKVAGSVSKKTDYVVAGEEAGSKLTKARELGVAVLTEDEWLELIGE
NT seq 2154 nt   +upstreamnt  +downstreamnt
atggccaccaaggcgaagaagacgctggtcgacgtcgacaagctcaccaaggcccaggcc
aaggtcgagcacatgaggcttacgctcgagatcgaggcgcacaacgagcgttattaccag
aacgatgcgccgaccgtgtccgatgcggcctacgatgcgctgcggcgtcgcctggaggcg
atcgaggccagatttcccgatctcgtcaccaaggattcgccgacgcagacggtgggcgca
gcgccggcccgcggcttcgccaaggtgcaacatgccgttccgatgctgtcgctcggcaac
gcattcagcgacgaggacgtcaccgagttcgtcgagcgcatcaggcgcttcctcaagctg
gatgccgatcagatgccggcgctggtggctgagcccaagatcgacggactgtcgctctcg
ctgcgctatgaaaatggcgagctggtccgcgccgcgacgcgcggcgacggtttcaccggc
gaggacgtgaccgccaacgtccgcaccatcaaggacattccgcacacgctgaaaggccgc
aacgttccggcagcctgcgaaatgcgcggcgaagtctatatgctcaagaaggacttcctc
gagctgaacaagaagcaggccgaagccgacgatacgatcttcgccaatccgcgcaattcg
gcggcgggttcgctgcgccagaaggacgtctcgatcaccgcatcgcgaccgctgaaattc
ttcgcctatacatggggcgagatgagcgagccgcccgccgacacccagcacggcatgctg
caatggatggacagagccggcttcgtggtcaatccgctgatcacgctatgcaagagcgtc
gatgacgtgctgaaattctacgccaggatcggcgaggagcgtgcttcgctcggctacgac
atcgacggcgtggtctacaaagtcgatcgcctcgactggcaggagcggctcggtttcgtc
tcgcgtagcccgcgctgggccatcgcgcacaaattcgcggccgagcaggcaacgacgatt
ctcaaggggatcgatatccaggtcgggcgcaccggggcgatgacgccggtcgcgcggctg
gagccggtcacagtcggcggcgtcgtcgtgtcgaatgcgacgttgcacaacgaagactac
atcaagggcatcggcaacgacggaaatccgatcagggatggcgttgatctccgcgtcgat
gacaccgtcgtggtgcagcgcgccggcgacgtgatcccccaggtcgtcagcgtcgtgctc
gacaagcggccgaagagtgcgaagccttacaagttcccggacacctgcccggtgtgcggc
agccacgcgatccgcgaggaaggcgaggcggtgcgccgctgcaccggcgcgctgatctgt
ccggcgcaggcggtcgagcggctcaagcatttcgtgtcgcggctggccttcgatatcgat
ggtctcggcgagaagcaaatccaggaattctacgaggacgggctggtgaagtcgccggtc
gatatcttcacccttcgggagcgggacgagcggtcgagcagcaagctgatggagcgcgag
ggctacggtgagacctcggtgcgcaacctgttcgacgcgatcgacgcacgtcgcaagatc
gagctgcaccggctgatcttcgcgctcggcatccgccatgtcggcgaaggcaatgccaag
ctgctggcgcggcactaccacacgatcgagaatttccgcgacgcgatgctggccgctgcc
aggggcagcggcgacgaagagaacggcaccgaagcctaccagcacctcaacgacatcgat
ggcatcggcgagatcgtcgccgatgccgtcgtcgagttctttgccgagccgcgcaacgtc
aaggcgctcggcgaattgttgcgccagatcgaggtcaagccggccgagcagccgcgcaag
agctcgccggtctcggacaagaccgtggtgttcacgggctccctgaccaagttcacccgc
gacgaggccaaggcgatggccgagcgtctcggcgccaaggtcgccggctcggtttcaaag
aagaccgactacgtggtcgccggcgaggaagcaggctcgaaactcaccaaggcgcgtgag
ctcggtgttgcggtgctcaccgaggacgagtggctggagctgatcggagagtaa

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