Bradyrhizobium roseum: QUH67_28230
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Entry
QUH67_28230 CDS
T09605
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bros
Bradyrhizobium roseum
Pathway
bros03030
DNA replication
bros03410
Base excision repair
bros03420
Nucleotide excision repair
bros03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bros00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QUH67_28230 (ligA)
03410 Base excision repair
QUH67_28230 (ligA)
03420 Nucleotide excision repair
QUH67_28230 (ligA)
03430 Mismatch repair
QUH67_28230 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bros03032
]
QUH67_28230 (ligA)
03400 DNA repair and recombination proteins [BR:
bros03400
]
QUH67_28230 (ligA)
Enzymes [BR:
bros01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QUH67_28230 (ligA)
DNA replication proteins [BR:
bros03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QUH67_28230 (ligA)
DNA repair and recombination proteins [BR:
bros03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QUH67_28230 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QUH67_28230 (ligA)
MMR (mismatch excision repair)
DNA ligase
QUH67_28230 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QUH67_28230 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WKA27428
LinkDB
All DBs
Position
complement(5967958..5970114)
Genome browser
AA seq
718 aa
AA seq
DB search
MSKTAKARTPVEIDKLTKAQAKVEHKRLSLELEAHNERYYQKDAPTVSDAAYDALRQRLE
AIEAKFPDLVTTDSPTQKVGAAPARGFAKVQHAVPMLSLGNAFSDEDVTEFVDRIRRFLK
LDAEHIPALVTEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDIPHALKG
RNIPAACELRGEVYMLKKDFLELNKKQAEAEDTVFANPRNSAAGSLRQKDVSITASRPLK
FFAYTWGELSERPADTQHGMLAWMDKAGFAVNPLTTLCKDVDAVLEFYKKIGEERASLGY
DIDGVVYKVDRLDWQDRLGFVSRSPRWAIAHKFAAEQATTVLNGIDIQVGRTGALTPVAR
LEPVTVGGVVVSNATLHNEDYIKGIGNDGNPIRDGVDLRVGDTVVVQRAGDVIPQVVSVV
MDKRPSSAKPYRFPETCPVCGSHAVREEGEAVRRCTGALICPAQAVERLKHFVSRLAFDI
DGLGDKQIQEFYEDGLVMSPVDIFTLQKRDARSASKLMAREGYGETSVRNLFNAIDARRS
IDLHRLIFALGIRHVGEGNAKLLARHYHTIENFREAMLAAAKGTKDEENTTEAYQDLNNI
GGVGEIVADAVVEFFAEPRNVKALGELLREIEVKPAEQPRKSSPVSDKTVVFTGSLTKFT
RDEAKAMAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKARELGVAVLTEDEWLTLIGE
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagaccgcgaaagccagaacccccgttgaaatcgataagctcaccaaggcccag
gccaaggtcgagcacaagcggctgtcgctggagctcgaggcgcacaacgagcgctactac
cagaaggacgcgccgaccgtttcggacgccgcctacgacgcgctgcgccagcggctggag
gcgatcgaggcgaaatttcccgatctcgtaaccacggattcgccgacgcagaaggtcggc
gccgcgccggcgcgcggctttgccaaggtgcagcacgccgttccgatgctctcgctcggc
aatgccttcagcgacgaggacgtcaccgagttcgtcgatcgcatccgccgctttctcaag
ctcgatgccgagcatattccggcgctggtgaccgagccgaagatcgatggcctgtcgctc
tcgctgcgctacgaaaatggcgaactggtgcgcgcggccacgcgcggcgacgggtttacc
ggagaggacgtcaccgccaatgttcgcaccatcaaggacattccgcatgcgctgaaaggg
cgaaacattccggccgcctgcgaactgcgcggcgaagtctacatgctcaagaaggacttt
ctcgagctcaacaagaagcaggccgaggccgaagacaccgtgtttgccaacccgcgcaac
tcggcggccggctcgctgcgccagaaggatgtctcgatcaccgcgtcgcggccgctgaaa
ttctttgcctatacctggggcgaactgagcgagcggccggccgatacccagcacggtatg
ctggcgtggatggacaaggccggctttgccgtcaatccactgaccacgctctgcaaggat
gtcgacgcggttcttgaattctacaagaagatcggcgaggagcgcgcctctctcggatac
gatatcgacggcgtggtctacaaggtcgaccggctggactggcaggatcgtcttggcttc
gtctcgcgcagcccgcgctgggcgatcgcgcacaaattcgcggccgagcaagcgacgacg
gtcctcaacggcatcgatatccaggtcggccgcaccggcgcgctgacgccggtggcgcgg
ctcgagccggtcaccgtcggcggcgtcgtcgtctcgaacgcgacgctgcacaacgaggac
tacatcaagggtatcggcaacgacggcaatccgatccgcgacggcgtcgatctcagggtc
ggcgacaccgtcgtcgtccagcgcgccggcgacgtgatcccgcaggtcgtcagtgtcgtg
atggacaaacggccaagcagcgcaaagccctacaggtttccggagacgtgcccggtttgc
gggagccacgcggtgcgtgaggaaggcgaggcggtgcgccgctgcaccggtgcgctgatc
tgcccggcgcaggcggtggagcggctgaagcatttcgtctcgcggctggcgttcgatatc
gacggcctcggcgacaagcagatccaggaattctacgaggatggcctcgtgatgtcgccg
gtcgatatcttcacgctgcagaagcgcgacgcgcggtcggccagcaagctgatggcgcgc
gagggctatggcgaaacctcggtgcgcaacctgttcaatgcgatcgacgcccgccgctcg
atcgacctgcatcgtctgatcttcgcgctcggcatccgacacgtcggcgagggcaatgcc
aaattgctggcgcggcactaccacacgatcgagaattttcgcgaggcgatgctggccgcc
gccaaggggacaaaggacgaggagaacaccaccgaggcctatcaggacctcaacaatatc
ggcggcgtcggtgagatcgtggcggacgcggtggtggagttcttcgccgaaccgcgcaat
gtgaaggcgctcggcgaactgctgcgtgagatcgaggtcaagccggccgaacagccgcgc
aaaagctcgccggtttcggacaagaccgtggtgttcacgggctcgctgaccaagttcacc
cgcgatgaggccaaggcgatggccgagcgcctcggcgccaaggttgcgggctcggtgtcg
aagaagacggattatgtggtggcgggtgaggatgcggggtcgaagctgaccaaggcgcgc
gagcttggcgtggcggtactaaccgaggatgaatggttgacgctgatcggggagtga
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