KEGG   Brassica rapa (field mustard): 103838307
Entry
103838307         CDS       T03449                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    103838307
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:brp03021]
    103838307
Enzymes [BR:brp01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     103838307
Transcription machinery [BR:brp03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     103838307
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 103838307
NCBI-ProteinID: XP_009112989
LinkDB
Position
A09:complement(7537859..7547222)
AA seq 1460 aa
MEEKCEELEVPMGTLKSISFSISNNKDRKNMSVMEVEAANQVTDSRLGLPNRDDICKSCG
SKDRKVCEGHFGVINLRYPVINPHLLKEVATLLNKFCPGCKYTKKKQSQSQNPEDRPDRC
RYCISNTDYPLMKFRVTTKEAFRRSGIVCEVSEDNVLKLSKRGLSALPPDYWDFMPKDPN
IDESCLKPSRRILTHAQVYALLSGIDERVIRKEIPMFDSLPLASFPVTPNGHRVSEMVTQ
FTGPRLVFDERTRIYKKLVGFEGNGLELSSRVMECMQYSRLFSENVSPSQESANPYQKKS
DTPELRGLRFMKDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPRSIAERLQVSENLNDWNR
DRLVTSCFHKLLEKGETHVRRGGRLVGIRAIDDLQTGDSFLRTLKDGDTVLMNRPPSIHQ
HSLIAMSVKVLPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKAELEELVALDKQL
VNRQNGRNLLSLGQDSLTAAYLVNVETNCFLNRAEMQQLQMYCPFELPRPAIIRGSSTSS
EPQWTGKQLFGMLFPPGFEYAYPLNNVVVTNGELLSSSDGSGWLRDGEGNFIQGLMKHDK
EKVLDIIFSAQEMLSQWLLNRGLSVSLSDLYFASDKHSRRNLTEEISYGLQEAEQVCNKQ
QLMVESRRDFLAVNGEEDTVVADDLELFCYERQRSATLSKLAVSAFKDAYRDVQALAYRY
GDQSNAFLVMSKAGSKGNMGKLAQHSMCIGLQNSSVALSFGFPRKLTCASWNDPNSPLRG
ARGEDRTAHESFVPFGVVESSFLTGLNPLESFVHSVTSRDSSFSGNADLPGTLSRKLMFF
MRDIYAAYDGTVRNSFGNHLVQFRYESSDDAEEDMTGEAVGSLSACAITEAAYSALDQPI
SLLETSPLLNLKNVLECGSKKGLKEQTMSLYLSETLSKKKHGFEYGALDIKRHLEKLCFS
EIVSTSMIIFSPRTNTRMPMSSWVCHFHISKKVLKQNQLDLESVVSSLNKQYANRKKELK
LDVIDLDIQSKNHCSWDDKAMEDDRVCITVTVLEASRHDSLELDAIRLVLIPFLLDSPVK
GYREIKKVDILWVDRPKAPQRNKKGLAGELFLKVTMHGVRGKRSFWSALLETCLPIMDMI
DWTRSHPDNIRQCCSVYGIDAGRSIFLADLESAVSDTGKAMLREHLLLVADSLSVTGEFV
ALNPKGWSRQRQAESTPAPFAQACFSSPSQCFLKAAKEGVTDELEGSIDALAWGKVPSFG
TGDQFEIIISPKNHGFSTPVVDVYGFLSRTATLPKRKAVRATSSSLPKSDEFTVQPFPVL
DTALSKAVKTLDGKGLTRSQLRMIFTWNDMEKLSRSLKRILYNYEIDATLNELDGRLLMM
ALLFHPNRDEKIGPGFKGIKVANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPK
RVNFYKAKYLRNGTVQPGAI
NT seq 4383 nt   +upstreamnt  +downstreamnt
atggaggaaaaatgcgaggagcttgaggtgcccatggggactctaaagtcaataagcttt
agcatttcgaataacaaagaccgaaaaaacatgtctgtcatggaggttgaagcagcgaat
caagtgactgattcccggttagggctcccaaatcgggatgatatatgcaaatcatgtggc
agcaaagatagaaaagtttgtgaagggcattttggggttataaacctcaggtacccggtg
attaacccgcatttacttaaggaggtagctacattgttgaacaagttctgccctggatgt
aaatacacgaagaaaaaacagtctcagtctcagaatcctgaagaccggcctgacagatgt
agatattgcatttcaaatacagattaccctctaatgaagttcagggtaacaacaaaagaa
gcctttaggcgatctggaatcgtttgtgaagtgagtgaagacaatgtgttgaagctcagt
aaacggggactatcagcattacctccagattattgggattttatgcctaaagacccaaat
atcgacgaaagctgtttgaaaccaagcaggcggattctaactcacgcacaggtttatgca
ctgttgagtgggattgatgagagggtgatcaggaaggagatccccatgttcgactctctt
cctctggcatcttttccagttacaccaaacggtcatcgtgtatccgagatggtcactcag
ttcaccgggcctcgactagtttttgatgaacggactcgtatctacaagaaactagttggc
tttgaaggaaatggtcttgagttgagttcacgtgtgatggaatgcatgcaatactcaaga
ctcttttcggaaaacgtgtctccgagtcaagaatccgcgaacccttaccagaagaagtca
gatactcccgagctacgcggtctaaggttcatgaaagatgtgcttctcggcaaaagaagc
gaccacacgttccgcacagtggttgtcggcgacccttctctcaagctcaacgagatcggc
atacctcggagtatcgcagagaggcttcaagtatccgagaatctcaacgactggaacaga
gatcgtctcgtcacttcctgtttccacaagctcctcgagaaaggagagactcacgtgagg
agaggaggtcgcttagttggtatcagagccatcgacgatctccaaacgggagacagcttc
ttacgcacgttaaaggatggagacacggtgctgatgaacagacctccttccattcatcag
cactcgctcatcgcaatgtctgttaaagtcctccccactacctccgttgtctctttaaac
cccatctgttgcttaccctttcgtggtgacttcgatggagactgtcttcacgggtacgtt
cctcagtctatccaagccaaggctgagctcgaggagcttgtggctttggataagcagctt
gttaacagacagaacggtcgtaacttgctttcgttaggacaggacagcttgacggctgcg
tatctggttaacgtcgagacgaactgttttctgaaccgagctgagatgcagcagcttcaa
atgtattgcccctttgagcttcctcggcctgcgatcatccgaggttcgtctacgagcagt
gagccgcaatggacggggaagcagctgtttgggatgcttttccctcccgggttcgagtac
gcttaccctctgaataatgtggttgtaaccaacggggagcttttgtcttcttccgatggg
tctggttggttgcgtgacggagaaggaaacttcatccagggtttgatgaagcacgataaa
gagaaagttcttgatataatcttctcggctcaagagatgctctctcagtggttactgaat
cgaggactgagtgtttctttatctgatttgtacttcgcatctgataaacactctcggaga
aacttgacggaggagattagttacggcttgcaagaagctgagcaagtctgcaacaagcag
cagctcatggtcgagtcccgcagagacttcctcgcggtcaacggagaagaagatacggtc
gtcgctgatgatttggagctgttctgctacgagagacagagatcagctaccttaagcaag
ctcgcggttagtgccttcaaggacgcgtatagagacgtccaggctctggcgtatagatac
ggagaccagtcgaacgcgtttctcgtcatgtccaaagctggtagcaaagggaacatgggg
aagctcgctcagcacagtatgtgcattggtcttcagaactcttctgttgcgttgtccttt
gggttcccacgtaagctgacttgcgcctcgtggaacgaccccaacagcccgcttcgaggc
gcaaggggagaagaccgaacggctcatgagtcttttgttccctttggtgtcgttgagagt
tcgtttctgacgggtctgaatcctttggagtcttttgttcattccgtgacgagccgagac
agctccttcagcggtaatgctgatcttcccgggacgcttagcaggaagctgatgttcttt
atgagggatatatacgctgcttacgacgggacggtgaggaactcgtttggtaaccatttg
gttcagtttcgttatgagagtagtgatgatgcagaagaggacatgactggtgaagcagtt
ggatcactttctgcttgtgcgatcaccgaggctgcttacagcgctcttgaccagcccatt
agccttcttgagacttcgcctcttctgaatcttaagaatgtgttggagtgtgggtcgaag
aaaggtctgaaagaacagacaatgtctctgtacttgtctgaaacactttctaagaaaaag
cacgggttcgaatacggggcactggacatcaagaggcacttggagaaactgtgtttctca
gagattgtttcaacgtccatgataatattctctccgaggactaacacaaggatgcctatg
agctcgtgggtttgccattttcatatctccaagaaagtactgaaacagaaccagctggac
ctcgaatctgttgtctcttcattaaacaagcagtatgcgaacaggaagaaagaactgaag
cttgatgtaatagatttagatatacaaagcaaaaaccactgctcttgggatgataaggca
atggaagatgatagagtctgcatcacagttactgttctcgaagcctccaggcacgattct
ttggagcttgatgctattcgccttgtcttgatcccttttcttctcgactctcctgtcaaa
ggctaccgagagattaaaaaggtggatatcttatgggttgacagaccaaaagctccccag
aggaacaagaaaggcttggcgggtgagcttttcttgaaggttacaatgcatggagttcgt
ggcaaaaggagcttctggagcgctcttctcgaaacctgtcttcccattatggatatgatc
gattggacaagaagccatcctgataatatccgacagtgctgctctgtttacggaatagac
gctggacgtagcatcttcctagcggatttggagtctgctgtgtcggatacgggcaaggcg
atgctgcgggaacatctgcttcttgtagctgattccctctcagtcaccggagagtttgtg
gcgctaaaccccaaaggctggagtagacaaagacaggccgagtctactcctgctcctttc
gctcaagcgtgcttctcgagcccaagtcagtgctttctcaaagcagctaaggaaggtgtc
acagacgagcttgaaggatctatcgacgcattggcttggggcaaagttccttcttttggg
actggagatcagttcgagatcatcatctcccctaagaatcatgggtttagtacaccggtg
gtagacgtgtatggctttctcagtaggacggccacgcttccaaagagaaaggctgtccgt
gcaacaagctcctccttgcccaaatcagacgagttcacggtccagccattccccgtgctc
gacacggctctctcgaaagcagtcaagacactcgatgggaaaggactcaccaggtcgcag
ctcagaatgatctttacatggaacgacatggaaaagctttctcggtcgctgaagcgcatt
ctctacaattacgagattgatgctacgttgaatgagttggacgggagacttctgatgatg
gctcttctcttccatcccaacagagatgagaagataggaccaggcttcaaaggaatcaag
gtggctaattctaagcacgggaatgctcgttgctttgaggtggtgagaacagacggaaca
actgaagatttctcttaccacaagtgtgtgttgggagcaacagagatcattgcccctaag
agggttaacttctacaaggcgaagtaccttagaaacggtacggtgcagcccggtgctatc
tga

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