Brassica rapa (field mustard): 103838732
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Entry
103838732 CDS
T03449
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
103838732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103838732
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
103838732
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
103838732
NCBI-ProteinID:
XP_009113432
UniProt:
M4EGQ8
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All DBs
Position
A09:complement(12235818..12242447)
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AA seq
931 aa
AA seq
DB search
MGVPAFYRWLADRYPKSISDVVEEESGLGALDITRPNPNGFEFDNLYLDMNGIIHPCFHP
EGKPAPATYDDVFKSMFEYIDHLFTLVRPRKLLYLAIDGVAPRAKMNQQRSRRFRAAKDA
AEAEAEEEMLRQDFEAGGQILSAKEKAETSDSNVITPGTPFMAVLSVALQYYIQSRLNRN
PGWRFVKVILSDSNVPGEGEHKIMSYIRLQRGLPGFDPNTRHCLYGLDADLIMLSLATHE
VHFSILREVITYPGQQEKCFVCGQTGHFAADCPGKSGSPDAASDIPIHKKKYQFLNIWVL
REYLQYELAIPDPPFTINFERIIDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMHVYRK
EFTAMGGYLTDSGEVLLDRVEHFIQAVAANEDKIFQKRTRIKQSMENNEEMKQRSRRDPS
EIPPEPVEDKIKLGEPGYKERYYAEKFSTTNPEEIEQIKQDMVLKYVEGLCWVCRYYYQG
VCSWQWFYPYHYAPFASDLKNLSDLEITFFIGEPFKPFDQLMGTLPAASSNALPGEYRKL
MTDPSSPILKFYPSDFEIDMNGKRFSWQGIAKLPFIEEKLLLVSTRKLEETLTVEERQRN
SVMLDLLYVHPTHPLGQRVMQYYHFYHQLPPNECLPWMIDPNTSQGMNGFLWFSERNGFQ
TRVVSPVNGFPCIEQNRALNVTYLNPAKHSHIPEPPRGAIIPDKILTPADIKPFPVLWHE
DNSNRRRQSRDRPQVAGAIAGHSLGEAAHRLIKNTLNMKSSAGSASGLIDPNSYNRNIPG
NHHYGGPRAAGSSSYRKSYGDDSSYYNYGKYNNSSQGMYSNGPRYPGPSPDYNRNYNSKM
VVKQPNHGGIRTGSSVEDNSRSKQLYSSYTEAANANINNPLPSPPTQWIGAPQGGNFSGG
YYREGVGYGEMNGKKVIYQPKAQQSRPGFNE
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagcgttctacagatggctcgccgaccgataccccaagtcaattagcgac
gtcgttgaggaagaatcgggtcttggtgccctagatatcaccagacctaaccctaacgga
ttcgaatttgataatttgtacctcgacatgaacggtatcatccatccctgtttccatcct
gaaggaaagcctgcacccgccacatacgatgatgtattcaaatcaatgttcgagtacatt
gaccatctatttactttagtgcgtcccaggaagcttctttatttggctatagatggagtt
gcaccaagagcaaagatgaatcagcagcgttctcggcgattcagagctgcaaaggacgct
gcagaggctgaagctgaggaagagatgttgagacaagattttgaggctggagggcaaatc
ttgtctgctaaagagaaggcagaaacctctgattcaaatgtcattactcctgggactccg
tttatggctgtactctcagtagctctgcagtattacatacaatctaggttaaatcgtaac
cctggttggagatttgttaaggtgattctctctgattcaaatgttccgggggaaggagaa
cacaagataatgtcatacattcgtctacaacgtggtcttcctggtttcgatccaaatacg
cggcattgtctatacggtctggatgcagatttgataatgctctctctagctacacatgaa
gttcacttttcaatcttaagagaggttatcacttaccctggccaacaagagaaatgtttt
gtgtgtggacaaactggtcattttgctgcagattgccctggaaaatcaggtagcccagat
gcagcatctgatattccaatccacaagaaaaaatatcagttcctgaacatctgggtgctg
cgagaatatctgcaatatgaattggccatcccagatcctcctttcaccatcaacttcgag
agaattatagatgactttgtattcctttgcttctttgttggcaatgatttcctgcctcat
atgcctactttagaaattcgagagggggctataaacttgctgatgcatgtttacagaaag
gaatttacagctatgggagggtatctaactgattctggtgaggttttactagatagggta
gagcatttcattcaagctgtcgcggcaaatgaagataaaatatttcagaaaaggacgcgg
ataaaacagtcaatggaaaacaatgaagaaatgaaacaaagatcaagaagagacccatct
gaaataccacctgaaccggtagaggataagattaagctgggagagcccggctacaaggag
aggtattatgctgagaagtttagtacgaccaatccagaggaaattgagcaaatcaaacaa
gacatggtactaaaatatgttgaaggtttgtgctgggtttgccggtactactaccaaggt
gtatgctcttggcaatggttttacccataccattatgccccatttgcttcagatcttaag
aatctatctgatttggaaatcacatttttcattggagagccctttaaaccttttgatcag
ttaatgggaaccctgccggctgcaagctcaaacgctctgcctggagaataccggaaattg
atgactgatccctcatctccgatcctgaaattttacccttctgattttgagattgacatg
aatggaaagcgcttctcttggcagggtattgcgaaacttcctttcattgaggagaagtta
ttgttagtatctacaaggaagcttgaagaaacgctaacggtggaagaacggcaacgcaac
agcgtgatgcttgatttgttatacgtacaccccactcatccactgggccagcgggttatg
cagtattaccacttctaccaccagttgccaccaaatgaatgtcttccatggatgattgac
ccgaatactagccaagggatgaacggttttctgtggtttagtgaaaggaacggtttccaa
actagagtcgtctcccctgtcaatggcttcccatgcattgagcagaaccgagccttaaat
gttacatacttgaatcctgccaaacactctcatatcccagaaccaccaagaggagctatc
attccggacaagatcttgacgccggcagatataaagccatttcctgttttatggcacgaa
gacaatagcaaccgacgccgacaatcccgagatagaccacaagtggctggtgctatagcc
ggacattcactgggagaagcagcacatcgtctgatcaaaaacacccttaatatgaaatct
tccgctggttcggcttcaggattaattgacccaaactcatacaaccgaaatataccgggt
aatcatcattacggtggaccaagagcagcgggttcctcttcttacaggaaatcatatggc
gatgactcgagctactacaattacggaaagtataacaatagctctcaaggaatgtacagc
aacggtccgagatatcctggtccatcaccagactataaccggaactacaactccaagatg
gtagtaaaacaaccgaaccatggtggaatcagaactggttcatcggtagaagataacagc
agaagcaaacaattgtattcaagctatacagaagctgctaatgcaaatatcaacaaccca
ttgccatcaccgccaacacaatggattggtgcaccgcaaggtgggaatttcagcggtgga
tactatagggaaggagttggttatggtgagatgaatggaaagaaagtgatttatcagcct
aaggcacagcaaagtcggccaggctttaatgaatga
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