Brassica rapa (field mustard): 103845154
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Entry
103845154 CDS
T03449
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
103845154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brp03400
]
103845154
Enzymes [BR:
brp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
103845154
DNA repair and recombination proteins [BR:
brp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
103845154
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
103845154
NCBI-ProteinID:
XP_009120237
LinkDB
All DBs
Position
A10:complement(12025856..12032532)
Genome browser
AA seq
1195 aa
AA seq
DB search
MTEEIKLSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCKPSDYFSAVRLIIPSLDRERGS
YGLKESVLATCLIDALGISRDAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQRRQGM
ASGGLSVKELNDLLDRLASSENRGGKTSVLSTLIQKTNAQEMKWVIRIILKDLKLGMSER
CIFQEFHPDAEDLFNVTCDLKLVCEKLRDRHQRHKRQDIEVGKAVRPQLAMRISDVNAAW
KKLHGKDVVAECKFDGDRIQIHKNGTEIHYFSRNFLDHSEYAHAMSDLIVQNIIADKCIL
DGEMLVWDTSLNRFAEFGSNQEIAKAAREGLDSHRQLCYVAFDVLYVGDTSVIHQSLKER
HELLRKVVKPLKGRLEVLVPEGGLNVHRPSGEPSWSIVVHSAADVERFFKETVENRDEGV
VLKDLGSKWEPGDRSGKWLKLKPEYVRAGSDLDVLIIGGYYGSGRHGGEVAQFLVGLADR
AEANVYPRRFMSFCRVGTGLSDEELNTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKERP
DVWIESPEKSIILSITSDIRTIRSEVFVAPYSLRFPRIDKVRYDKPWHECLDVQAFVELV
NSSNGTTQKQKESESTQDNPKVIKSSKRGGEKKNVPHVPSQFIQTDVSDIKGKTSIFSNM
IFYFVNLPRSHSLDTFHKMVVENGGKFSMNLNNSVTHCIAAESSGIKYQAAKRQRDVIHF
SWVLDCCSRNNLLPLQPKYFLHLTDASRTKLQDEIDEFSDSYFFDLDLEGLKQVLSNAKQ
SEDSKSIEYYKKKLCPEKRWSCFIGCCIYFHLYSETLSNEEEALLGIMAKRLALEVLMGG
GKVSNNLAHASHLVVLSIAEDSLDFTSVSKSFSEKEKRLLLKRRLHVVSSNWLEDSLQRE
ERVCEEVYTLRPKSMEESDTEESDKAEHDTTEVASGVSAQTEELASSKMAVASSRGRSST
RAGNKRGRSSTNSVKRVQRRRGKQPSKIGGSETEESDAATEEKAATRLSDDIAEDSDDAQ
RNSRRGRSAKRGKSRVAQPQRVQRPRRGKKPLKIGGDDSEENDDFDDKKNDSADETKHRE
SLERDNTVSVEEASSQDSRNAKTEMDREEKIQIHEDPLQAMLMNMIPSLTLRNTSRTGEA
STANVCGESESSEKRKLGAETDNACVKNAEADEVPPVKKKKVSYRDVAGELLKDW
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgacggaggagatcaaactcagcgtactagtgtctctcttcaactggattcagaagagc
aaaacctcatcccagaaacgctccaagttccgcaagttcctcgacacctactgcaaaccc
tccgattacttctccgccgtccgtctcatcatcccgtcgctcgaccgagagcgaggcagc
tacggcctcaaggagtctgtgctcgccacgtgtctcatcgacgccctcggaatctctcgc
gatgctcccgacgctgttcgccttctcaattggcgtaaaggaggaacggctaaggctgga
gccaacgccggaaacttctccttgattgctgctgaggtgctgcaacgtaggcaagggatg
gcgtctggtgggttgagtgttaaggagttgaatgatttgcttgatcgtttggcttcgagt
gagaacagaggggggaagacttctgttctttctacgctgattcagaagacgaatgcacag
gagatgaagtgggtcattaggatcattcttaaagacttgaagctggggatgagcgagagg
tgtatatttcaggagttccatccagatgctgaggacttgtttaatgtcacttgtgacttg
aaactagtctgtgaaaagctcagggatcgccaccaacgtcacaagcgccaggatatagaa
gttggaaaagccgtacgaccccagttagctatgcgtatcagtgacgtaaatgctgcttgg
aagaagctccatgggaaagatgtagttgctgagtgcaaatttgatggggatcgcatacag
atacacaaaaatgggactgaaatacattacttctctaggaacttccttgatcattctgaa
tatgcacatgccatgtctgatcttatcgtacaaaatataattgctgacaagtgtatcctt
gatggtgaaatgttggtctgggatacatcacttaatcggtttgctgagtttggttctaat
caggaaatagccaaagcagcaagggagggtctcgacagccatagacagttatgttatgtt
gcctttgatgtgctttatgttggcgatactagcgtcatccaccagagtttaaaagaacgg
catgaactcctgaggaaagtggttaagcctttaaaaggccggcttgaagttctagtgccc
gaaggtggtctcaatgttcatcgcccttctggagaaccaagttggtctattgtggttcat
tccgcagctgatgttgagcggtttttcaaagaaacagttgaaaatagagatgaaggagtt
gtgcttaaagacctgggatcgaaatgggaacctggagatcgtagtggcaagtggttgaag
ttgaagcctgaatatgtccgcgctggttctgatctagatgttcttataataggaggatac
tatggctctggccgtcacggaggagaggtagcacagtttctcgttgggttggctgaccgg
gcagaggcaaatgtatatcccaggcgatttatgtcgttttgtagagttggcacaggactt
tccgatgaagagcttaacactgttgtaagcaaactgaagccttatttcagaaaaaatgaa
cacccaaagaaggctccaccaagcttttaccaggtcacaaatcactcaaaagagagacct
gatgtttggattgaaagcccggaaaaatcaataatactctccatcactagtgacatcagg
acaataaggtctgaggtttttgtggcaccttacagcctcaggtttcctcggattgataaa
gtaagatacgacaaaccctggcatgaatgtctcgatgtgcaagcttttgtggaattggtt
aactcaagtaacggcaccacacagaaacagaaggaatccgaaagcacgcaggacaatccg
aaagtcattaaatcgtccaagagaggaggagagaaaaagaatgtgcctcatgtcccatct
cagtttattcaaactgatgtatcggatatcaagggcaagacctcaatcttctccaatatg
atattttattttgtaaacctgcctcggtcccattctcttgatacattccacaaaatggtg
gttgagaatggagggaagttctcaatgaacttaaacaattctgtgactcattgcattgca
gcggaaagcagtggaataaagtatcaggcagcaaaacgtcaaagagatgtcatccacttt
tcttgggtcttagattgttgttcacggaataatctgcttcctttgcagccaaagtacttc
ctccatctcactgatgcttcaaggactaaattacaggatgaaattgacgagttttccgat
tcttatttctttgatttagaccttgaaggtctcaaacaggtcttgagcaatgccaagcaa
tcggaagactcaaaatccattgaatactacaagaaaaagctatgtccggagaaaagatgg
tcctgcttcatcggttgctgcatttactttcacctctatagtgaaacattgagcaatgaa
gaggaagccctgttgggaatcatggctaagagattagcgcttgaagtcttaatgggtggt
ggtaaagtcagcaataatcttgctcatgcgtcgcaccttgtagtcctttctatagcagaa
gactctttggactttacttcagtttcaaaaagtttcagcgaaaaggagaaacgtcttttg
ctgaagagaaggctacatgttgttagctcgaactggttagaagacagcttgcaaagagag
gaaagagtatgcgaggaggtgtacactctgaggcctaagagtatggaagagtctgatact
gaagaatcagataaagctgaacatgatacaactgaagtagcttccggtgttagtgctcaa
accgaagagctagcttcctcgaaaatggcagttgcgagttcaagaggacggtcaagtact
agagctggtaataaaaggggaaggtcttctacaaactcagtgaaacgagtacagagacgc
agaggcaagcagccttctaagataggtggaagtgagacagaggagagtgatgcggctacg
gaagaaaaggctgcaacaagactcagtgatgatatagcagaagactctgatgatgctcaa
agaaactctaggagaggaagatctgcaaagagagggaagtctcgtgtggcacaaccccaa
agagtacagagaccaagaagaggcaagaagcctttgaagataggaggagatgactctgag
gaaaatgatgattttgatgacaagaaaaatgattctgccgacgagacaaagcacagagaa
tcactggagagagataacacagtatcagttgaagaggcctcctcgcaagattctagaaat
gcaaagaccgagatggatagggaagagaagatacaaatccatgaggatccattacaagct
atgttgatgaacatgatcccaagcctcactctgagaaacacaagccgaacgggcgaagct
agtacggctaatgtttgtggtgagagtgagtcttcagagaaaagaaaacttggcgccgag
actgataatgcttgtgtgaagaacgcagaggcagatgaagttcctcctgtgaagaaaaag
aaagttagctaccgcgatgttgccggagaactgctcaaagactggtga
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