Brassica rapa (field mustard): 103847464
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Entry
103847464 CDS
T03449
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103847464
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103847464
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103847464
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_15
Arf
AAA_29
AAA_23
nSTAND3
ORC-CDC6-like
AAA
AAA_30
Zeta_toxin
AAA_7
Motif
Other DBs
NCBI-GeneID:
103847464
NCBI-ProteinID:
XP_009122792
UniProt:
M4CZF4
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All DBs
Position
A10:20526449..20528457
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AA seq
325 aa
AA seq
DB search
MEEEKRSDTTVEISGLRFTYPGIDGHPPPGSKPLIEDFSLKLNSSERCLLVGSNGAGKTT
ILKILGGKHMVEPHMVRVLGRSAFHDTGLTSSGDLCYLGGEWRRDVAFAGFEVPIQMDIS
AEKMIFGVAGIDPKRRAELIKVLDIDISWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEI
TVDLDVLARADLLAFLRKECQERGATIIYATHIFDGLEDWPTHIVYVANGKLQLAMPMEK
VKETSKKSLMRTVESWLRKERDEERKTRKERKANGLPEFETRAEESRVTGDPARMLNNGW
AAGRLHSTIAGGEDHFVLSSNRVLR
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggagaagcgtagtgatacaacggtggagatctccggattacgattcacgtat
cctggaatcgacggacatccacctccgggatcgaaaccgctcatcgaggatttctctctg
aagctcaactcgagcgaacggtgtctcctcgtcggatctaacggcgccgggaaaacaacg
atactgaagatattgggagggaaacatatggtggagccgcacatggttagggttcttggt
cgatctgcgtttcacgacaccggtttgacatcttctggtgatctctgctatctcggcggc
gagtggaggcgtgacgtggcatttgcaggatttgaagtgccgattcaaatggatatatcg
gcagagaagatgattttcggagtggctggtattgatccaaagagaagagctgaattgatc
aaggtgttggatatcgatatctcatggagattgcacaaggtctctgatggccagagaaga
cgcgtccagatttgcatgggactcctcaagcctttcaaggttctccttttggatgaaatc
actgttgaccttgacgttctcgccagagccgaccttttggcatttctgaggaaggaatgc
caagaacgaggagctaccattatctacgccactcatattttcgatggccttgaggattgg
cctacacacattgtgtatgtagcaaatgggaagttgcaattagcaatgccaatggagaaa
gtgaaggagacaagcaagaagtcattgatgagaacagttgagagttggttgaggaaagaa
agagatgaggagaggaaaacaaggaaagaaaggaaagccaatggccttcctgaattcgaa
actcgtgctgaagaaagccgtgtcaccggtgatcctgctcggatgctcaacaatggctgg
gctgccgggaggcttcactctaccattgcaggcggtgaagatcatttcgtccttagctca
aacagagttctcagataa
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