Brassica rapa (field mustard): 103874295
Help
Entry
103874295 CDS
T03449
Name
(RefSeq) LOW QUALITY PROTEIN: structural maintenance of chromosomes flexible hinge domain-containing protein GMI1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
brp03036
]
103874295
03400 DNA repair and recombination proteins [BR:
brp03400
]
103874295
Chromosome and associated proteins [BR:
brp03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
103874295
DNA repair and recombination proteins [BR:
brp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
103874295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
TRAF_BTBD17
CSS-motif
Motif
Other DBs
NCBI-GeneID:
103874295
NCBI-ProteinID:
XP_033129289
LinkDB
All DBs
Position
A06:complement(21780004..21790075)
Genome browser
AA seq
1625 aa
AA seq
DB search
MSSRRLVRRALILDEDDEDDVVYSFKVLLPNSTSVPLTVINPEPEMLMGSFVDLVKEEYE
KARKSCLLMTKRTRIDWNLGGKFHLESDGERMKGMVRFAAFKPYLCHIIRLDDGSGVCSS
MYENLWDLTPDTDLLKELPENYSFETALADLIDNSLQAVWSCSPGERRLISVDVSADRIS
LFDTGRGMDSSEENAIVKWGKIGGSLHRSEKTFAIGGKPPYLKPFFGMFGYGGPYACMFL
GRCNFSFCFVKPMIFCIIFLRLTLFFIRRTLVSSKTKESKKVFTLQYEKEALIGNHSVSG
KHWKTGGGMRDPTEDENKLSPHGSFTKVEIFESEFDMSKIYQLQCRLKDIYFPYIQCDEL
SKTGRTERPVEFQVSGEDLAEIAGGEVAITNLNSKGEEFSFQIRFSLTSEKRKGKPQQAN
ARLKFVYFPIVQGKESIEKILEGLQEEGCKVSESFETFGRVSIRRLGRLLPEVRWDSIPF
MQRGNRASTLLKSCRRVKCFIDLDAGFNPTPSKTDLASQNPFSVALRNFGSKQTDKEKDT
DVKMVIHREGKPLTQLEQNYQDWVMKMHDAHDEEATSGEDEAILVLESLDKKALGILRDA
VRVHKVVTRNGKLWKRGQNIKLLKGACGGVHNGNIYATIDYFLIEGFEDEAGGDTRILCR
PIDCPKKEGCKLSCIDGSWRLELKKSLTLPITIIDSGKCLHADADEWTRKLERQQEKAPS
KIDLLDERDCRELNIDGELPVSVRVGRAPPQQIVAVIRPASFTSVTPSKKLEQKHVVSME
GKEMVMVVKLADPNTKPSAKVATKSVCSQRVFPTSCKGIGGLYIFSLRSKFPNLFKRAGT
YNFSFSIGDSIRCNKTVVVKPSSKAAKWKLDDSLDPLPWNVRVGSCLGPLRIACFDEYEN
QIQFTSVPSLEVELKANPGFQLKIDDFEANLIDGGSTLMIKEMLVETDELDKISPSYDAT
LEIRAQDTPLCVSTACKVNPGPLKRIEVNNPQAFENLLPGSTVENLILEMFDGFNNHIAE
GTSVLIKTDGYCVEDWMGDNRKVDGHGCIDLSGILKVTEGYGKHVSFSVVSDCKEIFRKE
SQIEERELRLVTELPESCTAGSNLTSLIFKVTDSDGSLDTSIHHDEKTRCIHTLSVESDS
SSVESGIRYAFVHGSCKVPSLSLPETEGIFSFKVFHSRYPELHVNLEILITPAPTSERDD
IGCSTPYSRMTSTPQSGMASATPFPGVTPTPSLGLERTPCSQFGVLAIRSPSLDGSCPSG
VMDIVQYTQSLKQELSTYEAQREVTDERLKCLEAEQEQVEQELITFQASLEPQGVAFPEC
LSTKEQMMKHIEEEHYNTAASVFCSLYRKAPPPKSRFLSNKGGKGEVFGIVALLGSVAST
SLSRVLSVYLGNDTMLALVCKSSAYGPTSCAEYLKLQSETEYQRLQSEAAKLGRSITNDL
LIHCLDAFRPWSSGLMKNDPQRRLAMVNPSLSNGDPIPGFKDYAVNMIELATGELDIQTK
LGHGLRETLFYGLFGDLHVYETGRDLEAALPFISGSDAVSLDGLISKRNGLMHSVCLIPE
VHFPVTVTENHEKTLVKMEITREKKRKREEEILEERGLLRKIEKKMKKATKKYERFKAMA
DSQDV
NT seq
4878 nt
NT seq
+upstream
nt +downstream
nt
atgagttctaggagattggtcaggagagcattgattctagacgaggacgatgaggacgat
gtggtttacagcttcaaggtcctcttgcctaacagcacgagtgtgcccctcacggtcatt
aacccggaacctgagatgctgatggggagttttgtcgacctggtgaaggaggagtatgaa
aaagcacgaaaaagctgtctgttgatgaccaagaggacaaggattgactggaacttgggt
ggaaagtttcatctcgagtcagatggtgaaaggatgaaaggaatggttcgctttgctgcg
ttcaagccctacttgtgccacataatacgtcttgatgacggttctggtgtatgttccagc
atgtatgagaacttgtgggatttgacacctgacactgatcttctaaaagagctacctgaa
aattatagctttgagacagctcttgcggatctaatagataattctttgcaagctgtgtgg
tcttgttcccccggagagcgaaggctgattagtgtggatgtttctgctgatcggatctca
ctctttgatactggaagaggaatggacagtagtgaggaaaatgctattgttaaatgggga
aaaatagggggctcattacatagatctgaaaagacttttgctattggaggcaaaccacca
taccttaagccattctttgggatgtttggatatggaggtccttatgcttgtatgttcttg
ggaaggtgcaacttcagcttctgttttgtcaaacctatgatcttctgcattatcttcctg
cgtttaactctcttctttattaggcgtacgttggtgtcttctaagactaaagagtccaag
aaagtatttactttgcaatacgagaaagaagccttgattggcaaccactcagtctctgga
aaacactggaagactggtggtggcatgagggacccgacagaggatgaaaataagttatcg
cctcatggaagtttcacaaaggttgaaatatttgaatcagaattcgacatgtccaaaata
taccaactacagtgcaggcttaaggatatttactttccttacattcagtgtgacgaactt
tccaaaactgggaggactgaaaggcctgtagagtttcaggtcagtggagaagatttagct
gagatagcaggtggtgaagttgccattaccaacctaaactccaagggtgaagaattttcg
tttcagattcgattcagtcttacaagtgaaaaacgaaaagggaaacctcaacaagcaaat
gctcgcctcaaatttgtttattttccaatcgtccagggaaaagaaagcatcgagaaaatt
ttggagggattacaagaggaaggatgcaaagtttccgaaagcttcgagacttttggtcgt
gtttcaataagaaggcttggtcgtctacttccagaagtccgttgggattcaataccgttc
atgcaaagaggtaacagagcgtctactttgctgaaatcttgccgaagagtaaaatgcttt
atcgatttggatgctggttttaacccaacgccctccaaaaccgaccttgcaagccaaaat
cctttctcagtggctctaagaaacttcggtagtaaacagacagataaggagaaggatact
gatgtcaaaatggtgattcaccgagaaggaaaaccactcacacaattggagcagaattat
caggattgggttatgaagatgcatgatgcccatgatgaagaggctacgtcgggtgaagat
gaagctattctcgttcttgaatccttggataaaaaggctcttggcattttgcgtgatgct
gtgagggtgcacaaggtagtcacgagaaacggaaagttgtggaaacgtggtcagaatata
aagcttctgaaaggagcttgtggtggggttcacaatggtaatatctatgctaccattgac
tatttcttaatagaagggtttgaagacgaagcaggcggtgatactcggattctttgcagg
cctatcgattgccctaagaaagaaggatgcaagctttcatgcatcgatggaagttggaga
ctggaacttaagaagtctttaacattgcctattactataatcgactctggaaagtgccta
catgcagatgcagacgaatggactagaaaacttgaaaggcaacaggaaaaggcaccttcc
aaaattgatttgctggatgagagggattgcagagaattgaacattgatggggaactacca
gtttctgtgcgtgttgggagagctcccccgcagcaaattgtggcagttattcgacctgca
tccttcacatctgttacaccgtcaaagaagttggaacagaagcatgttgttagtatggag
ggaaaagaaatggtcatggtggtaaaactggcagacccaaatacgaaaccaagtgctaag
gttgccaccaaatcagtgtgttcgcagcgcgtgtttcctacgtcctgtaaagggattggt
ggtctctacatcttctcccttcgctccaagtttccgaacctcttcaagagagctggcact
tacaacttttctttctctatcggcgactcgattaggtgcaacaaaacggttgttgtaaaa
ccttcttcaaaggcagcaaagtggaaacttgatgatagtctggaccccctgccttggaat
gttcgagttggttcgtgtcttggacctctccgtatagcctgctttgatgagtatgaaaat
cagatacagttcacttctgttccaagcctggaagttgaactgaaagccaatcctggattt
caactcaagattgatgactttgaggccaacctgatagatggaggatcaactctcatgatc
aaggaaatgctcgttgagactgatgaattagacaagatcagcccaagttatgatgcaacc
ttggagatacgcgcacaggacacacctttatgtgtctcgactgcttgtaaagtgaacccc
gggcctctgaaacgtattgaagtgaataatcctcaggcttttgaaaatttgcttccaggt
tctactgttgaaaatttgattttggagatgttcgatggattcaataaccacatcgcagaa
gggaccagtgttctgataaaaactgatggctactgtgtcgaagactggatgggtgacaac
cgtaaggttgatggtcatggctgcattgatctctctggcattctcaaagtcacagaaggc
tatggaaaacatgtctcattctctgttgtgtctgattgtaaagagatctttcggaaagag
tctcaaatcgaggaacgagagctgaggcttgtaacagagctgccggagtcctgtactgcg
ggttcaaatcttacgagcctcattttcaaagtgacggattcagatggttctttggatact
agtattcatcatgacgaaaaaaccaggtgtatccacaccctgagcgttgaatctgattca
agcagcgttgagagtggaatcagatatgcctttgtccatggctcctgcaaagttccttct
ctttccctacctgagaccgagggtatcttctccttcaaggttttccattctcggtatcct
gagcttcatgtgaatttagagattctgataacgcctgctccaacaagtgaaagagatgac
attggttgttcaacaccttactcaaggatgacatcaacacctcaatcagggatggcttca
gccactccgtttccaggggtgactccaactcccagtttaggattggaacgaactccatgt
tcacagtttggtgttttggccattaggtcaccgtcattggatggcagttgcccatctggc
gtgatggatatagtgcagtacactcagagtttaaagcaggaactcagtacatacgaggca
cagcgagaggtaacagatgagcgcctaaaatgtttggaggctgaacaagaacaggtcgag
caagagctgattacttttcaagcttctctcgaacctcaaggagtggcgttcccagagtgt
ttatctaccaaagaacaaatgatgaaacacattgaagaggagcattacaacactgcggca
tcggttttctgttctttgtacagaaaggctccgcctccgaagtctcggtttctgtcaaac
aaaggaggaaaaggagaagtgtttggcattgtagcccttcttggttcagttgcctccacc
tcactaagcagggtattatctgtatatttggggaatgacacaatgcttgcgttggtatgc
aaatcatcagcatatggaccaacaagctgtgctgagtacctgaagcttcaatctgaaact
gagtaccagaggcttcaatctgaagcagctaagctcggacgatctataaccaacgatttg
cttattcactgtcttgatgcgttcagaccttggagcagtggacttatgaaaaatgatccc
cagaggagattagccatggttaacccttccctgtccaatggagatcctataccaggtttc
aaagattacgcggtgaacatgatcgagttggctacaggggagctggatatacaaacaaag
ttgggtcacgggcttagagagacgctcttctatggcctttttggagacttacacgtatat
gagacaggaagggatcttgaagcagcccttcctttcatcagtggtagtgatgctgtgtct
ctagatggtctgatctccaaaagaaacggactcatgcactctgtatgcctcattccagaa
gttcattttccagtgacagtaacagagaatcacgagaagaccttggtgaagatggaaata
acaagggagaagaagagaaagcgtgaggaggagatacttgaggagagaggtttgttgagg
aagatagagaaaaagatgaagaaggcaacgaagaagtacgaacgtttcaaagccatggct
gactctcaggacgtataa
DBGET
integrated database retrieval system
