Bradyrhizobium amphicarpaeae: CIT40_24800
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Entry
CIT40_24800 CDS
T05700
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
brq
Bradyrhizobium amphicarpaeae
Pathway
brq03030
DNA replication
brq03410
Base excision repair
brq03420
Nucleotide excision repair
brq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
brq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CIT40_24800 (ligA)
03410 Base excision repair
CIT40_24800 (ligA)
03420 Nucleotide excision repair
CIT40_24800 (ligA)
03430 Mismatch repair
CIT40_24800 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
brq03032
]
CIT40_24800 (ligA)
03400 DNA repair and recombination proteins [BR:
brq03400
]
CIT40_24800 (ligA)
Enzymes [BR:
brq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CIT40_24800 (ligA)
DNA replication proteins [BR:
brq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CIT40_24800 (ligA)
DNA repair and recombination proteins [BR:
brq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CIT40_24800 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CIT40_24800 (ligA)
MMR (mismatch excision repair)
DNA ligase
CIT40_24800 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CIT40_24800 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
FokI_D1
Motif
Other DBs
NCBI-ProteinID:
AWM04868
UniProt:
A0A2U8Q6B7
LinkDB
All DBs
Position
complement(5673047..5675200)
Genome browser
AA seq
717 aa
AA seq
DB search
MARAAKSKATPLRDVADLTKPQAKVEHMRLALEIEGHNERYYQEDAPTVTDAEYDALRRR
FNAIEKRFPEFVSADSPSQKVGAAPSGRFRKVGHSVPMLSLDNAFAEEDVRDFVGRIMRF
LKLDDDKVDFSAEPKIDGLSMSLRYEGGELVTAATRGDGAVGEDVTANIRTLEDVPQKLK
GRNVPDICEVRGEVYMTKKAFLALNERQKAAGDTIFANPRNSAAGSLRQKDPTITASRPL
GFFAYAWGEMSTMPEATQSGMIGWFERCGFKTNPLTKLCHSVEELIAFHQSIEEERAELD
YDIDGVVYKVDRIDWQERLGFVSRTPRWAIAHKFPAERAMTVLRDIEIQVGRTGSFTPVG
KLEPVGVGGVIVQNVTLHNEDYIKGIGSKGESLREGRDIRIGDTVVIQRAGDVIPQIVDV
VLDKRPKTAREFHFPKKCPCPLHTDVVRGETAAGEEESRARCTGEFACPYQKIEHLKLFV
SRRAFDIDGLGEKQLQYFFDEGWVKEPADIFTLEKRNAKLKLEEIEGYGETSVRNLFGSI
AARRKIALERFIYALGMRHVGETTALALARGYGSWDAFHDACLKVAHGDEEAMAEMDALD
QIGDTVIKSIADYFGESHNRGIVERLTREVEIVDAEKPKSNSAVAGKTVVFTGSLEKMTR
DEAKATAERLGAKVSGSVSKKTDLVVAGPGAGSKLAEANKHGVKVLTEDEWLALIGE
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggccagagcagcaaaatccaaagccacaccgcttcgcgacgtcgccgacctcaccaag
ccccaagccaaggtcgagcacatgcggctggcgctcgagatcgaggggcataacgagcgc
tactatcaggaagacgcgcccaccgtcaccgacgccgagtacgacgcactgcgccggcgc
ttcaacgccatcgagaagcgctttcctgaattcgtcagcgcggactcgccctcgcagaag
gtcggcgcggcgccgtcaggccgcttcaggaaagtcggccattccgtcccgatgctgtcg
ctcgacaacgcctttgcagaagaggacgtgcgcgacttcgtcggccgcatcatgcgcttc
ctgaagctcgacgacgacaaggtcgatttttccgccgagccgaagatcgacggcctctcg
atgtcgctgcgctacgagggcggcgaactggtgaccgcggcgacgcgcggggacggcgcg
gtcggcgaggatgtcaccgccaacatccgcacgctcgaagatgttccgcagaagttgaag
ggacgcaacgtccccgatatctgcgaggtccgcggtgaggtctacatgaccaagaaggcg
tttctcgcgctcaacgagcggcagaaggcagccggtgacaccatcttcgccaatccgcgc
aattcggccgccggctcgctccggcagaaggatccgaccatcaccgcctcgcgtcccctc
ggcttcttcgcctatgcctggggcgagatgagcaccatgccggaagcgacgcagagtggc
atgatcggctggttcgagcgctgcggcttcaagaccaatccgctgaccaagctatgccac
tccgtcgaggagctgatcgcgttccaccagagcatcgaggaagagcgcgccgagcttgac
tacgacatcgacggcgtcgtctacaaggtcgatcgcatcgactggcaggagcgtctcggc
ttcgtctcgcgcacgccgcgctgggcaatcgcgcataaattcccggccgagcgcgccatg
accgtgctgcgcgacatcgagatccaggtcggccgtaccggctcgttcacgccggtcggc
aagctggagccggtcggcgtcggcggcgtgatcgtgcagaacgtcacgctgcacaacgag
gactacatcaagggcatcggcagcaagggcgagagcttgcgcgaggggcgcgacatcagg
atcggcgacaccgtcgtgatccagcgcgccggcgacgtgattccgcagatcgtcgacgtc
gtcctcgacaagcgaccgaagacggcgcgcgaattccatttcccgaagaagtgcccgtgc
ccgctgcacaccgacgtcgtgcgtggcgagacggccgccggcgaagaggaatcccgcgcc
cgctgcaccggcgagttcgcctgcccctaccagaagatcgagcacttgaaactgttcgtg
tcacgccgtgctttcgacatcgacggtctcggggagaagcagttgcagtatttcttcgac
gaaggatgggtcaaggagcccgccgacatcttcacgctggagaagcgcaacgcgaagctg
aagctggaggagatcgagggctacggcgagacgtcggtccgcaatctcttcggctccatc
gcagcacggcgcaagatcgctctcgagcgcttcatctatgcgctcggcatgcgtcatgtc
ggcgagaccacggccttggcgctggcgcgcggctacggctcctgggacgccttccacgac
gcctgcctgaaggtcgctcacggcgacgaggaggcgatggccgagatggacgcgctcgac
cagatcggcgacaccgtgatcaagagcatcgcggactatttcggcgagagccacaatcgc
ggcatcgtcgagcggctgaccagggaggtcgagatcgtcgacgccgagaagccgaagagc
aattcggcggtcgccggcaagaccgtggtgttcacgggctcgctggagaagatgacgcgc
gacgaggcgaaggcgacggcagagcgtttgggggcaaaggtgtcgggctcggtgtcgaag
aagaccgatctcgtcgtcgccggtcccggcgcgggctcgaagctcgcggaggccaacaag
cacggcgtcaaggtgctgaccgaggacgagtggctggcgctgatcggggagtga
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