Bradyrhizobium cosmicum: S23_17290
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Entry
S23_17290 CDS
T01796
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
brs
Bradyrhizobium cosmicum
Pathway
brs03030
DNA replication
brs03410
Base excision repair
brs03420
Nucleotide excision repair
brs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
brs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
S23_17290 (ligA)
03410 Base excision repair
S23_17290 (ligA)
03420 Nucleotide excision repair
S23_17290 (ligA)
03430 Mismatch repair
S23_17290 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
brs03032
]
S23_17290 (ligA)
03400 DNA repair and recombination proteins [BR:
brs03400
]
S23_17290 (ligA)
Enzymes [BR:
brs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
S23_17290 (ligA)
DNA replication proteins [BR:
brs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
S23_17290 (ligA)
DNA repair and recombination proteins [BR:
brs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
S23_17290 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
S23_17290 (ligA)
MMR (mismatch excision repair)
DNA ligase
S23_17290 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
S23_17290 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
FokI_D1
Motif
Other DBs
NCBI-ProteinID:
BAL74945
UniProt:
A0AAI8MAF2
LinkDB
All DBs
Position
1818632..1820779
Genome browser
AA seq
715 aa
AA seq
DB search
MARAAKSKPLRDVADLTKAQAKVEHMRLALEIEGHNERYYQEDAPTVTDAEYDALRQRFN
AIEKRFPEFVSAESPSQKVGAAPSGRFRKVRHSVPMLSLDNAFAEEDVRDFVGRIVRFLK
LDDDKVDFSAEPKIDGLSMSLRYEGGELVTAATRGDGSEGEDVTANIRTLEDVPQKLKGR
NVPDVCEVRGEVYMTKKAFLALNERQKAEGSTIFANPRNSAAGSLRQKDPTITASRPLGF
FAYAWGEMSAMPEETQSGMIHWFERCGFRTNPLTKLCHSVEELIAFHQSIEEERAKLDYD
IDGVVYKVDRIDWQERLGFVSRTPRWAIAHKFPAERAMTVLRDIEIQVGRTGSFTPVGKL
EPIGVGGVIVQNVTLHNEDYIKGVGNKGEVLREGRDIRIGDTVVIQRAGDVIPQIVDVVL
DKRPKSAREYHFPKKCPCPLHTDVVRGETAAGEEESRARCTGEFACPYQKIEHLKLFVSR
RAFDIDGLGEKQLQYFFDEGWVKEPADIFTLEKRNSKLKLEEIEGYGETSVRNLFGAIES
RRRIALERFVYALGMRHVGETTALALARGYGSWNAFHDACLKVVKGDEEAMAEMDALDQI
GETVIKSIADYFGESHNRGIVERLTREVEIVDAEKPKSNSAVAGKTVVFTGSLEKMTRDE
AKATAERLGAKVSGSVSKKTDLVVAGPGAGSKLAEANKHGVKVLTEDEWLTLIGE
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggcaagagcagcaaaatcaaaaccgctccgtgacgtcgccgacctcaccaaggcgcaa
gccaaggtcgagcatatgcggctggcgctcgagatcgagggccacaacgaacgctattat
caggaggacgcgcccaccgtcaccgacgcggaatacgatgcgttgcgtcagcgcttcaac
gcgatcgagaagcgcttcccggaattcgtcagcgcggaatcaccctcgcagaaggtcggc
gcggcgccgtcggggcgtttcaggaaggtgcggcattccgttcccatgctgtcgctcgac
aatgcgtttgccgaggaggacgtgcgcgacttcgtcgggcgcatcgtgcgcttcctgaag
ctcgacgacgacaaggtcgacttctccgcggagccgaagatcgacggcctttcgatgtcg
ctgcgctacgagggcggcgaactcgtcaccgcggcgacgcgcggcgacggttcggagggc
gaggatgtcaccgccaacattcgcacgctcgaggacgtgccgcagaagctgaagggacgc
aacgttcctgatgtctgcgaggtgcgcggcgaggtctacatgaccaagaaggcgttcctt
gcgctcaacgagcgacagaaagccgaaggcagcacgatctttgccaatccgcgcaattcg
gccgctggctcgctccggcagaaggatccgaccatcacggcctcgcgcccgctcgggttc
ttcgcctacgcttggggcgagatgagcgcgatgccggaggagacgcaaagcggcatgatc
cactggttcgagcgttgcggcttcaggaccaatccgctgacgaagctgtgccattcggtc
gaggagctgatcgcgttccatcagagcatcgaggaagagcgcgcgaagctcgactacgac
atcgacggcgtggtctacaaggtcgaccgcatcgactggcaggagcggcttggcttcgtc
tcgcgcacgccgcgctgggccatcgcgcataaattcccggccgagcgcgccatgaccgtg
ctgcgcgacatcgagatccaggtcggccgcaccggctcgttcacgccggtgggcaagctc
gagccgatcggcgtcggcggcgtgatcgtgcagaacgtcacgctgcacaacgaggactac
atcaagggcgtcggcaacaagggcgaggtgttgcgcgagggccgcgatatccggatcggc
gacaccgtcgtgatccagcgcgccggcgacgtcattccgcaaatcgtcgacgtcgtcctc
gacaagcggccgaagagtgccagggaatatcacttcccgaagaagtgcccgtgcccgctg
cacaccgacgtcgtgcgcggcgagaccgccgcaggcgaggaagaatcccgcgcccgctgc
accggcgagttcgcctgcccctatcagaagatcgagcatctcaagctgttcgtgtcgcgg
cgcgccttcgacatcgacggtctcggcgagaagcagctgcagtatttcttcgacgaagga
tgggtcaaggagcccgccgatatcttcacgctcgagaagcgcaattcgaagctcaagctg
gaggagatcgagggctacggcgagacctcggtgcgcaacctgttcggcgccatcgagagc
cgccgcaggatcgcgctggagcgcttcgtctacgcgctcggcatgcgccatgtcggcgag
accacggcgctggcgctggcgcgcggctacggctcctggaatgccttccacgacgcctgc
ctcaaggtcgtcaagggcgacgaggaggcgatggcggagatggacgcgctcgaccagatc
ggcgagaccgtgatcaagagcatcgcggactatttcggcgagagccacaaccgcggcatc
gtcgagcggctgaccagggaggtcgagatcgtcgacgccgagaagccgaagagcaactcg
gccgtcgccggcaagaccgtggtattcacgggctcgctggaaaagatgacacgcgacgag
gccaaggcgaccgcagagcggctcggcgcgaaggtctcgggatcggtctccaagaagacc
gatctcgtcgtcgcaggacctggtgcaggttcgaagctcgctgaggccaacaagcacggc
gtcaaggtgttgaccgaggacgagtggctgacgctgatcggggagtga
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