Brevibacillus ruminantium: NDK47_03855
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Entry
NDK47_03855 CDS
T09631
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
brum
Brevibacillus ruminantium
Pathway
brum03030
DNA replication
brum03410
Base excision repair
brum03420
Nucleotide excision repair
brum03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
brum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NDK47_03855 (ligA)
03410 Base excision repair
NDK47_03855 (ligA)
03420 Nucleotide excision repair
NDK47_03855 (ligA)
03430 Mismatch repair
NDK47_03855 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
brum03032
]
NDK47_03855 (ligA)
03400 DNA repair and recombination proteins [BR:
brum03400
]
NDK47_03855 (ligA)
Enzymes [BR:
brum01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NDK47_03855 (ligA)
DNA replication proteins [BR:
brum03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NDK47_03855 (ligA)
DNA repair and recombination proteins [BR:
brum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NDK47_03855 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NDK47_03855 (ligA)
MMR (mismatch excision repair)
DNA ligase
NDK47_03855 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NDK47_03855 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
HHH_8
HHH_3
zf-IS66
BRCT_2
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
USG66448
LinkDB
All DBs
Position
747218..749242
Genome browser
AA seq
674 aa
AA seq
DB search
MNDMDRLTAEARILELREQIEHHNRLYHTEDRPEITDQEYDQLVRELQNLEDLFPDMVTP
DSPTQRVGSAPLSAFEKVVHRTPMLSLGNAFGEEDLRDFDRRVRQIVGNQQVRYVCELKI
DGLAISLHYENGVFVKGATRGDGQVGEDITQNLRTIRSIPLRLTRPLTLEVRGEAFMPRT
AFEKLNKEREERGEALFANPRNSAAGSLRQLDPKIAASRQLDTFIYAIGDLQGVDVESHS
AGLDLLAELGFKVNQERRTYDDIDGVISFINSWVEKRAQLPYDIDGIVIKVDSYGQQEEL
GFTAKSPRWAVAYKFPAEEAITVLKGIEVSVGRTGTVTPTAILEPVSLAGTTVKRASLHN
EDMIREKGLLIGDHVMVKKAGDIIPEIVAVLPERRDGSETPFLMPTHCPECGSELVRLEE
EVALRCINPMCPAQIREGIIHFVSRQAMNIEGLGEKVVAQLYQFEIIRSVADLYYLHEQR
DVLLNMERMGEKSVDNLLAAIEASKENSLEKLLFGLGIRLVGAKAARVIAEHFGEMDAIM
QAAAEELTQIDEIGPKMAASIVDYFRQPQAQAVIERLKAASVNMSYKGIRVESGADLPFA
GKTIVLTGTLSTMTRQEAEEAIARLGGKVTGSVSKKTDLVIAGEKAGSKLEKAEKLGVTV
MDEAGFRELLQGQD
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgaacgatatggatcgattgacggcggaagcacgaattctggaattgcgggaacaaatt
gagcatcacaaccgtctgtatcatacagaagaccgtccggaaataacagaccaggagtac
gaccagctcgtgagggagctgcaaaatctggaggatctttttcctgacatggtcaccccc
gactctccgacgcagagagtgggcagcgcccctttatccgcgtttgaaaaggtcgtccac
aggacaccgatgctcagtttgggcaatgccttcggtgaggaggatttgcgcgactttgac
cgccgggtgcgccagatcgtcggcaatcagcaggtgcgctatgtttgtgagctgaaaatc
gatggattggcgatatcccttcactacgaaaatggggtgttcgtcaagggagcgacacgc
ggagacggacaggtcggggaggatatcacgcaaaacctgcggacgatccgctccatccct
ttgcgtctgacgcgtccgctgacactggaggtgcgcggggaggcgtttatgccgcgaact
gcctttgagaagctgaacaaggagcgggaagagcggggagaagctctctttgccaacccg
cgcaattccgccgccggatcattgcgtcagctcgatcccaaaattgctgcgtcaaggcag
ctggacacctttatttacgcgatcggcgatttgcagggcgtggatgtggagtcgcacagc
gcaggactggatctcctggcagagctcggtttcaaggtcaatcaggaacgccgcacgtat
gatgacattgacggggtgatctcctttatcaacagttgggtagagaaacgggcccagctt
ccgtatgatattgacgggatcgtcatcaaggtggacagctacggccaacaggaagagctg
ggcttcaccgcgaagagccctcgctgggccgttgcttacaagttccccgccgaagaggcc
attacggtgctgaagggaatcgaggtttccgtcggacgcaccggtaccgtgacgccaacc
gcgattctggagccggtcagtttggcagggacgaccgtgaagcgcgcctcgctgcacaac
gaggatatgatacgggaaaaaggcctgttgatcggcgaccatgtcatggtgaaaaaagcg
ggcgacatcatcccggagatcgtggccgttttgcctgagcggcgggatggaagcgaaacc
ccttttctgatgccgacgcattgtccggagtgcggcagtgagctggtgcgcctggaggaa
gaagtggccctgcgctgcatcaatccgatgtgtccggcacaaatccgcgagggcatcatc
cattttgtctcccgtcaggcaatgaatatcgaaggcctgggggagaaggtcgtagcgcag
ctttaccagtttgagatcattcgcagtgttgccgatctctactacctgcatgaacagcgc
gatgtgctgctgaacatggagcgaatgggtgaaaagtcggtagacaacctgctcgcggcg
attgaggcgagcaaggaaaattcgctcgaaaagctgttgttcgggctgggcattcgcctt
gtcggagcaaaagcggcgcgtgtgattgcggagcattttggggaaatggacgcgatcatg
caggctgctgcagaggaactgacccagatagatgaaattggtccgaaaatggcggccagc
atcgtcgattatttccgtcagccccaggcacaggcggtgattgagcggctgaaagcagca
agtgtcaacatgagctataaaggcatccgcgtagagagcggagcggatctgccgttcgca
ggaaaaacaatcgttttgaccggaaccttgtccacgatgacgcggcaggaggcagaggaa
gcgattgccaggttgggcggcaaggtgacgggcagtgtgagcaaaaaaaccgatctcgtc
attgcgggagaaaaggcgggctccaagctggaaaaggcggagaaattgggagtaaccgtc
atggatgaagctggttttcgcgagctgctgcagggacaagactag
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